UFO02945.5prime Sequence
1111 bp (979 high quality bases) assembled on 2009-02-18
> UFO02945.5prime
CAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACCAGCGATGT
CCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTCAAGAAGCA
GGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGTGGATGCCC
GCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCATCTTCGGC
TACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTACGACCGGGA
TCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAGCGCCAATC
CGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGAAGGCCAAC
ACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGATGCCCCCAC
CTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCACCACAAACC
TGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCAAGGTGCAA
ACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTACATTCGCGC
CCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAACCGCAGCC
TCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACATCATGCCT
TACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTCGATAAGTT
CCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCAGGACACTC
TGAAGGCGTGGCATGAGAAGAACCATCCCTGGCTGGACATGAGCGATGTA
CACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCCTTCTACAT
GGGTTGCCCGGGAAACGCCTGCTAGTTCGGTCTACTGGTGGCGCTACTGC
ATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCGAGCGCAC
TGGCGCATTTTCTCACTGTCTGGAACCCTGGAGACGTTGCGCGAGAGGAG
TGGTGGGCCAGGAGCCCATTCTGAGCCCCGGCTGCCCGCCTTTCAGTAAC
AGCAGCATGGTGGCTGCAAGCTCCAAGCGGCCATATGTGGGGCAACTTTC
GGCTGGAAACC
UFO02945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12162-RA | 1595 | CG12162-RA | 263..1365 | 9..1107 | 5200 | 98.5 | Plus |
| CG12162-RB | 1639 | CG12162-RB | 390..1382 | 119..1107 | 4650 | 98.3 | Plus |
| CG12162-RB | 1639 | CG12162-RB | 227..336 | 9..118 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5468203..5468629 | 119..545 | 2135 | 100 | Plus |
| 3R | 32079331 | 3R | 5468689..5469030 | 546..888 | 1635 | 99.1 | Plus |
| 3R | 32079331 | 3R | 5469085..5469309 | 888..1107 | 715 | 92.9 | Plus |
| 3R | 32079331 | 3R | 5468040..5468149 | 9..118 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:49 has no hits.
UFO02945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:01 Download gff for
UFO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 241..1352 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:58 Download gff for
UFO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 256..1367 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:45 Download gff for
UFO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 256..1367 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:45 Download gff for
UFO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5468033..5468149 | 1..118 | 96 | -> | Plus |
| 3R | 5468203..5468629 | 119..545 | 100 | -> | Plus |
| 3R | 5468689..5469030 | 546..888 | 99 | -> | Plus |
| 3R | 5469086..5469311 | 889..1111 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:58 Download gff for
UFO02945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1294411..1294752 | 546..888 | 99 | -> | Plus |
| arm_3R | 1293755..1293871 | 1..118 | 96 | -> | Plus |
| arm_3R | 1293925..1294351 | 119..545 | 100 | -> | Plus |
| arm_3R | 1294808..1295033 | 889..1111 | 92 | | Plus |
