UFO02952.5prime Sequence
1110 bp (1010 high quality bases) assembled on 2009-02-18
> UFO02952.5prime
CAGTCGACATGTCCCAGAGTTTTGTGCCAGTGCCAGAGAACAGCGATTTT
CCGCTGGAAAATCTACCCTACGCTGTCTTCTCAACCGAAAACAATAAAGT
TCACCGTATTTGTGTGGCCATTGGAGAGCATGTCCTGGACCTGAAAGCTG
TCTCGCAGTTGTTTCCTTTCCAAGTTCAGAAAAGCCTGCAGGCCGAAACT
TTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTGGTAAGAAG
CCAGACTCAAAAGCTATTGACGAAGGGTTCAGAATTGGACCACAATGTGG
ACTTGAAGGCGGTTTCCATTGTGCCACAGTCTGAGATCAAGCTGCACCTG
CCTGCACAGATTGGTGACTATACAGACTTTTACTCATCCATCCACCATGC
CACCAATGTCGGCATTATGTTCCGTGGACCAGACAATGCTCTGATGCCCA
ACTGGCGCCATCTGCCGGTGGGCTATCATGGTCGTGCAAGTTCTGTGGTG
GTTTCCGGTACTCCCATCCGTCGTCCTCTTGGTCAAACGTTTCCCGATGG
AGCAGAGAAGCCCGTCTTTGGCGCCTGCAAGCTTCTGGATTTCGAACTAG
AAATGGCTTTCTTTATCGGTGGTAAGGGAAATCAGCTGGGTGAACCCATA
CGCGTGGATGAGGCCTGGAAGAACGTGTTCGGTTTCACGCTGATGAACGA
CTGGAGTGCCAGGGATATTCAGAAGTGGGAATATGTGCCACTGGGCCCCT
TCACCGCAAAGAATCTGGGAACCACCATCTCCCCTTGGGTAGTGCCCACA
GCTGCCCTGAAGCCCTTCGTCTTGGACAACTTTCCTCAAGAACCGGAAGT
GCTTCCCTATCTGCGCCAGACATTCCCTTTAACTTTGATATCAACCTCGA
GGTGTCTTTGAAACCCGCGATCAAACGAAGCGCTTATTTCAAAGTCGAAC
TCAAACACTTTATGACTCACTGCAGCAATCGCTCATCACACAGTCACGTG
TAATCTGCGTCTGTGATCTGATGCTCGACGATCTCGGTGAAACTCCAGAC
TCGTACGATCATTAAAGCTCTGCTGAAGCACAAAAACATGGAGCTCGGGT
GTAGAACGAA
UFO02952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faa-RA | 1421 | CG14993-RA | 115..1229 | 9..1095 | 4870 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4072490..4073091 | 914..314 | 2930 | 99.5 | Minus |
| 3L | 28110227 | 3L | 4073152..4073369 | 313..96 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 4073754..4073840 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:39 has no hits.
UFO02952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:58 Download gff for
UFO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 110..1200 | 9..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:28 Download gff for
UFO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 115..1205 | 9..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:33 Download gff for
UFO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 115..1205 | 9..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:33 Download gff for
UFO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4072490..4073091 | 314..914 | 99 | <- | Minus |
| 3L | 4073152..4073369 | 96..313 | 100 | <- | Minus |
| 3L | 4073754..4073840 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:28 Download gff for
UFO02952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4072490..4073091 | 314..914 | 99 | <- | Minus |
| arm_3L | 4073152..4073369 | 96..313 | 100 | <- | Minus |
| arm_3L | 4073754..4073840 | 9..95 | 100 | | Minus |
