Clone UFO02954 Report

Search the DGRC for UFO02954

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:29
Well:54
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptPka-R1-RK
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02954.5prime Sequence

1110 bp (1008 high quality bases) assembled on 2009-01-24

> UFO02954.5prime
CAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGCAGAGCCTG
CGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGAGTCCTCAA
GGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCCCGTGCAGT
TCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCAAACTGGAT
GCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTCAGCCCGAT
GCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAATCTCCGCCG
AACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGGTGGTGCCC
AAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCCAAGAACGT
CCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATTTGATGCCA
TGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGCAGGGCGAT
GAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGATGTTTTCGT
CAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTTTGGTGAAC
TGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCGCCAAAACC
GATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGCATTCTGAT
GGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTTATCGCGCG
TGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAGTGGCCGAT
TCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTCAAGCAGGA
GCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGCGGTGGTGCT
GCAGCAGCGTTCTGGAGGGCGAGATCCCGCGAGGGTGGGCGTCTGGGTAG
CAGCGATACTTTGGCGAGAATGCTCTGCTTTGACGACACGTGCAGCGACT
GTTGTAGCTCGTGGACCGCTCAATGCGTCAAACTGGACGGGCGAGATTTG
AACCGGTTGGACCCTGCCCGAAAATATTAAAGCCACATCCGCATAACACA
GTTTCGTATC

UFO02954.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-RU 3570 CG42341-RU 476..1595 7..1110 4970 97.4 Plus
Pka-R1-RT 3240 CG42341-RT 146..1265 7..1110 4970 97.4 Plus
Pka-R1-RP 3577 CG42341-RP 483..1602 7..1110 4970 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20832845..20833207 182..544 1815 100 Plus
3L 28110227 3L 20833283..20833655 543..914 1815 99.7 Plus
3L 28110227 3L 20816658..20816834 7..183 885 100 Plus
U 3151297 U 973046..973165 58..183 415 90.5 Plus
Y 3667352 Y 3286046..3286204 183..7 395 84.2 Minus
3L 28110227 3L 20833747..20833861 930..1038 240 88.7 Plus
Blast to na_te.dros performed on 2014-11-28 23:11:40 has no hits.

UFO02954.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:55 Download gff for UFO02954.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RI 152..1278 1..1110 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:09 Download gff for UFO02954.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RP 476..1602 1..1110 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:47 Download gff for UFO02954.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RP 476..1602 1..1110 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:47 Download gff for UFO02954.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20816651..20816833 1..182 98 -> Plus
3L 20832846..20833205 183..542 100 -> Plus
3L 20833283..20833657 543..917 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:09 Download gff for UFO02954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20809751..20809933 1..182 98 -> Plus
arm_3L 20825946..20826305 183..542 100 -> Plus
arm_3L 20826383..20826757 543..917 99 -> Plus