UFO02954.5prime Sequence
1110 bp (1008 high quality bases) assembled on 2009-01-24
> UFO02954.5prime
CAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGCAGAGCCTG
CGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGAGTCCTCAA
GGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCCCGTGCAGT
TCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCAAACTGGAT
GCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTCAGCCCGAT
GCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAATCTCCGCCG
AACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGGTGGTGCCC
AAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCCAAGAACGT
CCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATTTGATGCCA
TGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGCAGGGCGAT
GAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGATGTTTTCGT
CAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTTTGGTGAAC
TGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCGCCAAAACC
GATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGCATTCTGAT
GGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTTATCGCGCG
TGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAGTGGCCGAT
TCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTCAAGCAGGA
GCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGCGGTGGTGCT
GCAGCAGCGTTCTGGAGGGCGAGATCCCGCGAGGGTGGGCGTCTGGGTAG
CAGCGATACTTTGGCGAGAATGCTCTGCTTTGACGACACGTGCAGCGACT
GTTGTAGCTCGTGGACCGCTCAATGCGTCAAACTGGACGGGCGAGATTTG
AACCGGTTGGACCCTGCCCGAAAATATTAAAGCCACATCCGCATAACACA
GTTTCGTATC
UFO02954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R1-RU | 3570 | CG42341-RU | 476..1595 | 7..1110 | 4970 | 97.4 | Plus |
Pka-R1-RT | 3240 | CG42341-RT | 146..1265 | 7..1110 | 4970 | 97.4 | Plus |
Pka-R1-RP | 3577 | CG42341-RP | 483..1602 | 7..1110 | 4970 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20832845..20833207 | 182..544 | 1815 | 100 | Plus |
3L | 28110227 | 3L | 20833283..20833655 | 543..914 | 1815 | 99.7 | Plus |
3L | 28110227 | 3L | 20816658..20816834 | 7..183 | 885 | 100 | Plus |
U | 3151297 | U | 973046..973165 | 58..183 | 415 | 90.5 | Plus |
Y | 3667352 | Y | 3286046..3286204 | 183..7 | 395 | 84.2 | Minus |
3L | 28110227 | 3L | 20833747..20833861 | 930..1038 | 240 | 88.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:11:40 has no hits.
UFO02954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:55 Download gff for
UFO02954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RI | 152..1278 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:09 Download gff for
UFO02954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RP | 476..1602 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:47 Download gff for
UFO02954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RP | 476..1602 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:47 Download gff for
UFO02954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20816651..20816833 | 1..182 | 98 | -> | Plus |
3L | 20832846..20833205 | 183..542 | 100 | -> | Plus |
3L | 20833283..20833657 | 543..917 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:09 Download gff for
UFO02954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20809751..20809933 | 1..182 | 98 | -> | Plus |
arm_3L | 20825946..20826305 | 183..542 | 100 | -> | Plus |
arm_3L | 20826383..20826757 | 543..917 | 99 | -> | Plus |