UFO02955.5prime Sequence
1127 bp (1049 high quality bases) assembled on 2009-02-18
> UFO02955.5prime
CAGTCGACATGCGCCAACTGCAGTTGCTTGGTTTTCTGATCGCCATACTG
CAAATCAGCTATATAAGTGCCCAAAACTTGCCATATATCCAGTGTCCGAT
GATATTTCGGTACCTGGAGTACGACAATCAGTTCATTGGACACTTGCAGC
TAACCCTGGATAGTACAAATACGGAGAACGTTGTGCGCGTTGAACTTTCC
CAGCGTGGCAGAAACACCCCGTCGACTCCGGGCACTCTTAACTTCTTGGA
GGATGAGGATTCGCTGAGGCATCGCTTGACTAACAATGAGCCCATCAACT
ACAGAATTGACTTTCCAACGCCGGGCGTGGTGCCCAAACTCACAAAGGTT
ACGGTTAATGGAAAAGTTGCGTGCGAGGCTGTGCCTTTTGGAGCTCCTAG
CACAAGGCTATCTTTGTCGCGAACTCTGCGAACTTCTGTGCCTTTGGCAG
CTATACCGCCGTCTCAGCGGACTGATCACCAATGGCCCCAGGCCCCTCAG
ACCAACTACACTGTATATGAGGAGGAGGAGGAAGAGGAGCCAGTTCAAAG
ACGCCGCCCACAACAGCGTCCTTCGAGGCCGCGTCCACAACAGGCGCCGT
CAAGACCACGGCTGCAACCCGTGCCTCAATTGCCACAAGAACCAGAGTTC
CAGACGTCAGCCAGACCTTCAGTTCATCCGTCGAATACGCCCGCGCAAGC
ATCCAAGTTCTATCCCCAGACAATTGGTCAACTGAGCGGAATCTGTGGGC
GTGAAAAGGTCATCCAGACACCCTTTATCCACAACGGAATTGAAGTGGAG
CGGGGTCAGCTGCCCTGGATGGCCGCTCTTTTCGAGCACGTTGGCAGGAC
TATAACTTTTTGTGCGGCGGAACGCTGATCTCGGCCAGAACAGTGATCTC
GGCTGCCCACTGCTTCGCTTTGGCAGTCGGATTTGCCGGGCGAGCGGACT
ATTGTTCGCTGGGGCGTACTCTGGATCTTTTTTCGTCGGAGCTACACTAG
TGTAGCGCGACTATATCCACGACAGTACAATCCCATGTAACACGATGCGA
TTAGCACTGCTCAGTTGTTATTCACGTGATATGCGAATACCTCAGCATCT
GTTAGGGACGGACTTTGCTCGAACTGC
UFO02955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9649-RA | 1713 | CG9649-RA | 136..1234 | 4..1082 | 4985 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14216060..14216719 | 1035..388 | 2775 | 97.9 | Minus |
| 3R | 32079331 | 3R | 14217530..14217747 | 221..4 | 1075 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14216914..14217080 | 387..221 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:04 has no hits.
UFO02955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:54 Download gff for
UFO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9649-RA | 118..1218 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:39 Download gff for
UFO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9649-RA | 134..1234 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:00 Download gff for
UFO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9649-RA | 134..1234 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:00 Download gff for
UFO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14216028..14216719 | 388..1062 | 97 | <- | Minus |
| 3R | 14216914..14217079 | 222..387 | 100 | <- | Minus |
| 3R | 14217530..14217748 | 1..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:39 Download gff for
UFO02955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10042636..10042801 | 222..387 | 100 | <- | Minus |
| arm_3R | 10041750..10042441 | 388..1062 | 97 | <- | Minus |
| arm_3R | 10043252..10043470 | 1..221 | 98 | | Minus |
