UFO02958.5prime Sequence
1156 bp (1061 high quality bases) assembled on 2009-02-18
> UFO02958.5prime
CAGTCGACATGGACTGCAAATCGCGACGCGGCACCAAAATATCGGTGATC
GCCCTGGGAAGTGCCCTCTGTTTCGTCATGATGGCATACTTTGTGTTCGG
CGACAGCAACGACGAGCAGGGTTTGCGGAATCTACGCATGATATCCATAC
TGTTCCGACATGGTGCCAAGAATCCGAGTGGCTTCTATCCGTTGGATCCG
CACGCTGCCCACGACTGGCAGGGCGGGATGGGAGCCCTCACGCCGAAAGG
CAGCCTGCAGGCGTACAACCTGGGAAGGAATCTGCGCATGCGCTACTACC
GTCTGCTGCCTCCGAACAGCCTTTACACCCAGCAGCAGGTGAATGTGCTC
AGCTCGGCCGCGGAACGCTGTGTGATGAGCGCCCAGAGCGTCTTGGCCGG
CATGATGCCGCCGCTGGAGAACAAGAATGTGCTACCCATTCCCTGGCAGC
CGGTGGCCGTCAATACGCTATCTCGCAATGAAGATATCCTGTTGGCCCAA
AAGAAACCGTGCTTGAAATATGACCACATTCTGCAGAAGCTTTACAAATC
TCCGCCTCCTGAACTCCAGAAACTGAACGAGGACAACATGGAGCTGTACA
AATTGCTAACCAAAAACACAGGCAAGAACATTTCAAATGTACTGGACGTG
GAGCTACTCTATGGCACACTCAAAACCGAAGAGGAAGCTAATCTGGTGCT
GCCCGATTGGACTGAGAATATATACCCCGAGGAGATTAGGCCACTAGCTG
AACGTAGCTATATGCTATTCACCGAAACAAATCTAATGAAGCGGATTAAG
GGTGGCGCTTTCCTTACGGATATACTCAACAAAATGCAGAATAAGCGCAA
GAGGAATCTCAATCCCGATCGCAAAATATTCCTGTACTCCGGTCATGATG
TGACTTTGGTTAACGTGATGAATTCCCTGGGCATACTGGACCAGACTACC
AAGCTTCCGGAATATGCATCGGCATTGGCCTTCGAGCTCATCACAGCAAG
TCTTTCAGTGATGAAGACTTTGAAGTGAGTGTTTACTACTACAAACAGCG
AAGAACAAATTTCCCAGGACTTGACATCCATTGCATGCCACGGTGTCTCA
CTGACCAGTTGAAGCCTCTGTAAGGCCTGCCTCTCAGAATACCATTGAAT
GGAGAA
UFO02958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6656-RA | 1542 | CG6656-RA | 198..1320 | 9..1123 | 5165 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21876994..21877398 | 625..1028 | 1960 | 99.5 | Plus |
| 3R | 32079331 | 3R | 21875490..21875630 | 9..149 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 21876761..21876898 | 489..626 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 21876347..21876476 | 245..374 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 21876574..21876688 | 374..488 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 21875715..21875810 | 150..245 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:27 has no hits.
UFO02958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:04:00 Download gff for
UFO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6656-RA | 198..1267 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:56 Download gff for
UFO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6656-RA | 198..1267 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:08 Download gff for
UFO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6656-RA | 198..1267 | 9..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:08 Download gff for
UFO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21875490..21875630 | 9..149 | 100 | -> | Plus |
| 3R | 21875715..21875810 | 150..245 | 100 | -> | Plus |
| 3R | 21876348..21876476 | 246..374 | 100 | -> | Plus |
| 3R | 21876575..21876688 | 375..488 | 100 | -> | Plus |
| 3R | 21876761..21876898 | 489..626 | 100 | -> | Plus |
| 3R | 21876996..21877400 | 627..1029 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:56 Download gff for
UFO02958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17701212..17701352 | 9..149 | 100 | -> | Plus |
| arm_3R | 17701437..17701532 | 150..245 | 100 | -> | Plus |
| arm_3R | 17702070..17702198 | 246..374 | 100 | -> | Plus |
| arm_3R | 17702297..17702410 | 375..488 | 100 | -> | Plus |
| arm_3R | 17702483..17702620 | 489..626 | 100 | -> | Plus |
| arm_3R | 17702718..17703122 | 627..1029 | 99 | -> | Plus |
