UFO02960.5prime Sequence
1078 bp (1012 high quality bases) assembled on 2009-02-18
> UFO02960.5prime
CAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACGCCTATCCC
CGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCCGCAGTTAC
AATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGAGGTCCTCA
ACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACACCACTCGT
GATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAATCTGGCGTG
CAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACACACACTTGA
GGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATGGCGAGCCC
CTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCGCCCAATAA
GAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGCTACTCACT
GCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGCGCAAATGG
ACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTACAAACGCAG
CGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCACCTGGAAG
TGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGAGCTTCTCC
ATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTGAAGCTATC
GCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTTCGCCAAGA
CGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCAAAAGTGAA
ATGTTCAATTACTATTTAAAATTTGTTCCCACATTATATATGCGAGGAAA
CAGCGACGGCGAGCCCATATACACGAATCAATTCTCCGTCACGCGATACC
GAAAAGATCTTTCAGATCGCGAGCGCGAATGCCGGGGATATTCTTCAGCT
ACGAGCTCTCGCCACTGATGTGAATTATGGCGGAGAGACCAGCTCATTTG
GCCACTTCGCCACGATTGCTGTTCCATCATCGGGAGGCGTGTTCACGGTG
GCCGGCATTCTCGCCGTGCTGCTGAACA
UFO02960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7011-RA | 1343 | CG7011-RA | 134..1205 | 9..1078 | 5190 | 99.3 | Plus |
| Prp31-RA | 1862 | CG6876-RA | 1738..1827 | 1078..989 | 405 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15162987..15163341 | 448..94 | 1775 | 100 | Minus |
| 3L | 28110227 | 3L | 15162500..15162837 | 786..449 | 1690 | 100 | Minus |
| 3L | 28110227 | 3L | 15161188..15161373 | 970..786 | 865 | 98.9 | Minus |
| 3L | 28110227 | 3L | 15163408..15163495 | 96..9 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 15161014..15161103 | 1078..989 | 355 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:37 has no hits.
UFO02960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:59 Download gff for
UFO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7011-RA | 126..1200 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:35 Download gff for
UFO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7011-RA | 130..1204 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:37 Download gff for
UFO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7011-RA | 130..1204 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:37 Download gff for
UFO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15162987..15163338 | 97..448 | 100 | <- | Minus |
| 3L | 15163408..15163499 | 1..96 | 95 | | Minus |
| 3L | 15161015..15161099 | 993..1077 | 97 | <- | Minus |
| 3L | 15161165..15161372 | 787..992 | 97 | <- | Minus |
| 3L | 15162500..15162837 | 449..786 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:35 Download gff for
UFO02960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15154115..15154199 | 993..1077 | 97 | <- | Minus |
| arm_3L | 15154265..15154472 | 787..992 | 97 | <- | Minus |
| arm_3L | 15155600..15155937 | 449..786 | 100 | <- | Minus |
| arm_3L | 15156087..15156438 | 97..448 | 100 | <- | Minus |
| arm_3L | 15156508..15156599 | 1..96 | 95 | | Minus |
