UFO02962.5prime Sequence
1092 bp (973 high quality bases) assembled on 2009-01-24
> UFO02962.5prime
CAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGAGATACACG
GTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAACTACAGCGA
GTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGATGTAATTG
GCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAACCATTAAT
TTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTTAAGAAAAC
ACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGGGCCCCTTT
TTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGTTTCAGAAG
TTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGCGAGTTGAA
CCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCAGGGATGGC
GGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCATGATTGCC
GTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATGAAGCACAA
GAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGAATCTCGCT
ATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGAAAACGAGC
ATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAGATCGACGA
GGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTCGCAATACG
GTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGTGCCACGGC
GATTATGTGAGGAATAATGTGGCGTACAGGTACGATGACAGGAGGAGCCG
CAGGAAGATCATGATGTTCGACTACCAGACATTGCGAGTCTCCTCTCCCA
TGGTCGATCTCAACGTCTTTTCTAGCCGTGTCCATTTTGCCGAGGTACGC
GATCCAACTTCGAGGCCATTCTTCTGTGATACACCTTGCGCTCATAATAG
CTATAAGGGAGCACGCAGAGAGTTCGATTTCTAAGTCGCGGTGGCTTCTG
AAGGAGTACGTGCGTTCTGCGTAGCTTCATATCGCAGTTCCT
UFO02962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JhI-26-RA | 1495 | CG3767-RA | 49..1121 | 5..1066 | 4915 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16289950..16290676 | 244..969 | 3395 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16289368..16289608 | 5..245 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:28 has no hits.
UFO02962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:53 Download gff for
UFO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-26-RA | 40..1126 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:30 Download gff for
UFO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-26-RA | 45..1131 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:33 Download gff for
UFO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-26-RA | 45..1131 | 1..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:33 Download gff for
UFO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16289364..16289608 | 1..245 | 98 | -> | Plus |
| 2R | 16289952..16290734 | 246..1022 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:30 Download gff for
UFO02962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12176869..12177113 | 1..245 | 98 | -> | Plus |
| arm_2R | 12177457..12178239 | 246..1022 | 98 | -> | Plus |
