UFO02965.5prime Sequence
1127 bp (1013 high quality bases) assembled on 2009-01-24
> UFO02965.5prime
CAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCTGGGGCCTG
ATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTGCCAGCATC
CTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATATCAAGCAAT
CAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGCAGGGGATG
ATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCCAAATCCAG
GGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCCTCCAAGAG
CTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCACGGACCGC
AGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGATTCGGGCG
ACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCATAAACACC
TGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACACCTTTGTG
ACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCTTCAGGCAC
CCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAACCAGTTCAA
TTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGTACCAAAAG
TTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAACAATACCGG
AGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGAGAAAGTGA
TTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTCTCTGTGCT
CAGTCCATCTTTAAGTGGAACCCAATGACCCGGAGCAGACAATTATGTAC
GAGCTGTACAAAGGACAACTCCCCACCAACACTTTGGAACTCAACAAGCG
CATCCTGCCACCAAACTGTCGCTGGATGAGACTCTTTCCAGATGAGCACT
ATTCCCTCATTTCCGGAGCACAGACCACCACAACCGGGTCTTCGAGCTTC
CTCATGGGAGTGCCTGAAATAAGCTGGCAGCAGCTACTCTACTGCAAACG
CGACCAGCTGGAGACAATATCCGACTCAGCTCAAAGCCGTCACCGTAACC
GCTTCCATCAGAGGACCGCTATGGTGG
UFO02965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-RA | 1548 | CG1635-RA | 77..1170 | 5..1081 | 4930 | 97.8 | Plus |
| CG1638-RB | 1567 | CG1638-RB | 200..1080 | 177..1047 | 980 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31589345..31589915 | 429..994 | 2565 | 98.6 | Plus |
| 3R | 32079331 | 3R | 31589043..31589286 | 186..429 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31591201..31591598 | 429..825 | 590 | 77.1 | Plus |
| 3R | 32079331 | 3R | 31588749..31588860 | 5..116 | 545 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31588920..31588990 | 116..186 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 31590898..31591056 | 186..344 | 225 | 76.1 | Plus |
| 3R | 32079331 | 3R | 31591702..31591745 | 930..973 | 190 | 95.5 | Plus |
Blast to na_te.dros performed 2014-11-28 19:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2707..2754 | 244..291 | 132 | 75 | Plus |
UFO02965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:52 Download gff for
UFO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 78..1175 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:40 Download gff for
UFO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 78..1175 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:05 Download gff for
UFO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 73..1170 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:05 Download gff for
UFO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31589044..31589286 | 187..429 | 100 | -> | Plus |
| 3R | 31588745..31588859 | 1..115 | 96 | -> | Plus |
| 3R | 31588920..31588990 | 116..186 | 100 | -> | Plus |
| 3R | 31589346..31590014 | 430..1081 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:40 Download gff for
UFO02965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27414467..27414581 | 1..115 | 96 | -> | Plus |
| arm_3R | 27414642..27414712 | 116..186 | 100 | -> | Plus |
| arm_3R | 27414766..27415008 | 187..429 | 100 | -> | Plus |
| arm_3R | 27415068..27415736 | 430..1081 | 96 | | Plus |
