UFO02968.5prime Sequence
1114 bp (1016 high quality bases) assembled on 2009-01-24
> UFO02968.5prime
CAGTCGACATGATCACCATGACTTCGTTTATCGAACTGCTGGGACTTTTC
TTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATATTCCGATA
CTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAACTCGATCA
TCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCAATCTGCTA
TGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGCCTGCGATG
GGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTGCATCATTG
TGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCAACATCTGG
CATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTCTTCTACGC
CTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTTCATCGATC
GTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTAACCGGCGC
ATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGAACGCGCCG
CAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCACATGGCCA
TCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCTACTGCACA
TTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATTGTGATTAC
CACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGACATCGATG
TGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCAAGGTGACG
TCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAAGGTTGGAATTCC
AGCCGCCTCATCAGCATCACATCATCTACGACACAACACATTGGCATCAC
GGGACTGCTGTCACTCCCGTTGCGATGCGCAGTGGCTGCCGCAGCTGCCG
TGCAGTAGCAGTTCGGCATACGGTCAACCGCGGCTACGAGCGGAGCCGCA
AGGCCAGCTTGCTCAGACCTGCAGCTTTCTAGACATTCGTTGGCCCCGCG
GGTCAGTAGTTGTCATATCTAATCTAATCTTATCTATCCAACTAGCTAGA
GAATCTGCATGAAC
UFO02968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3812-RC | 3566 | CG3812-RC | 305..1325 | 9..1015 | 4775 | 98.6 | Plus |
| CG3812-RB | 3795 | CG3812-RB | 534..1554 | 9..1015 | 4775 | 98.6 | Plus |
| CG3812-RA | 1831 | CG3812-RA | 443..1463 | 9..1015 | 4775 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12769914..12770571 | 333..981 | 2895 | 98.5 | Plus |
| X | 23542271 | X | 12767164..12767354 | 9..199 | 955 | 100 | Plus |
| X | 23542271 | X | 12769691..12769825 | 200..334 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:30 has no hits.
UFO02968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:50 Download gff for
UFO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RB | 525..1563 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:55 Download gff for
UFO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RA | 436..1474 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:49 Download gff for
UFO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RA | 436..1474 | 1..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:49 Download gff for
UFO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12767157..12767354 | 1..199 | 97 | -> | Plus |
| X | 12769691..12769824 | 200..333 | 100 | -> | Plus |
| X | 12769915..12770626 | 334..1027 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:55 Download gff for
UFO02968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12661190..12661387 | 1..199 | 97 | -> | Plus |
| arm_X | 12663724..12663857 | 200..333 | 100 | -> | Plus |
| arm_X | 12663948..12664659 | 334..1027 | 97 | -> | Plus |
