UFO02973.5prime Sequence
1046 bp (922 high quality bases) assembled on 2009-01-24
> UFO02973.5prime
CAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGATATTTTTG
CTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGCAGTGAGGA
GGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTACAGTGAAA
CAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGACTGATGCCA
CAATCATCCTCCACATCGACCACCACCACATTTCGACCAATATTTAATAT
ACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCGCAACTGCC
TCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCCATTTGACC
CATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGATCTGAGCCA
TAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCTGTCCAGGG
CGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAGACAAGGAT
GTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCCAACAACCG
TCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGAACTAACGC
TACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACGGATCCTTC
TTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGCAGCTGGAC
GGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGTAGGTGTTGC
GCTTGAACAAGAACGATTTTAAACAGCAAATCATACGAAAGCTTTCTCGC
CGCTACAAAAATAATTAACTGAGCTGCCGGACTGGAACACAGACATCGAG
AGCTGTGCAGCTGCTGACTCCATCGACACGATTAGCTTCTCACTACGACA
TCAGCTGCTACGATCGTACTGGGCACCCCTCCACCGCAGTCTCATCTATC
CACGAGCGGCGCTCAGGATACCATCGCCAATCGTCGCAGCATCACAGCCT
GCAAGCCAGTGACGCAATCGACGTCGAATGGCAATCGCATCCGGCA
UFO02973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 2053 | CG42709-RC | 205..1238 | 9..1013 | 4395 | 96.6 | Plus |
| CG42709-RA | 2186 | CG42709-RA | 338..1371 | 9..1013 | 4395 | 96.6 | Plus |
| CG42709-RB | 2212 | CG42709-RB | 364..1397 | 9..1013 | 4395 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12794381..12794656 | 501..776 | 1365 | 99.6 | Plus |
| 3L | 28110227 | 3L | 12794062..12794317 | 247..502 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 12793814..12794000 | 60..246 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 12791581..12791633 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:02 has no hits.
UFO02973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:48 Download gff for
UFO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-RB | 716..1691 | 9..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:27 Download gff for
UFO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1339 | 9..965 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:20 Download gff for
UFO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1339 | 9..965 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:20 Download gff for
UFO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12791581..12791633 | 9..61 | 100 | -> | Plus |
| 3L | 12793816..12794000 | 62..246 | 100 | -> | Plus |
| 3L | 12794062..12794315 | 247..500 | 100 | -> | Plus |
| 3L | 12794381..12794656 | 501..776 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:27 Download gff for
UFO02973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12784681..12784733 | 9..61 | 100 | -> | Plus |
| arm_3L | 12786916..12787100 | 62..246 | 100 | -> | Plus |
| arm_3L | 12787162..12787415 | 247..500 | 100 | -> | Plus |
| arm_3L | 12787481..12787756 | 501..776 | 99 | -> | Plus |
