UFO02984.5prime Sequence
1093 bp (966 high quality bases) assembled on 2009-02-18
> UFO02984.5prime
CAGTCGACATGCCCAGCGAGATTATAACCCTTCAATTGGGCCAATGTGGC
AATCAAATTGGTTTCGAGTTCTGGAAGAGATTGTGCCTGGAGCACGGCAT
CTCCCCGGATGGCGTCCTGGAAGACTTCGCCACCGATGGACAGGATCGCA
AGGATGTGTTCTTTTACCAGGCGGACGACAACCATTACATACCGCGGGCC
GTTCTCATAGACTTAGAGCCCAGAGTCATTAACAACATCATGACCTCTCC
GTACTCCAAGTTGTACAACCAGGAGAATGTGTTCCTCTCCAAGCACGGCG
GTGGAGCAGGAAACAACTGGGCGTCCGGCTTTAGCCAGGGTGAGAAGGTG
CAGGAGGAGGTGTTCGACATTCTCGACCGCGAGGCCGATGGCAGCGATTC
GCTGGAGGGATTCGTGCTCTGCCACTCGATAGCCGGCGGAACTGGGTCCG
GAATGGGCTCATATGTCCTGGAACGGCTGTCCGAACGCTTTCCCAAGAAG
CTCATACAGACGTACAGCGTTTTTCCCAATCAGGACGAGATCAGCGACGT
GGTTGTGCAGCCATATAACTCGATCCTTACCCTGAAGCGTTTGACCAAGT
GCGCGGACAGTGTGGTGGTGCTGGATAATACCGCACTGAACCGCATCGCC
ACCGAAAGATTGCACATCCAAACGCCCACTTTTACGCAGATCAACAATCT
GGTGTCCACCATCATGAGTCTGAGCACCACCACCCTGCGATATCCCTCGT
ACATGAACAACAACCTCATCGGTCTGACCGCCTCGCTCATTCCCACGCCC
CAGCTGCACTTCCTGATGACGGGATATACTCCGCTAATGTCCGACTGCGA
GACCAAGACAAGCGTTCGAAAGACCACCGTTTTGGATTTAATGCGTCGCC
TTCTGCAGCCGAAGAACATGATGGTTTTCCGCGCTGACGGAACAAGCAGA
GCCGCCAGTGCTTCTTCTTCCATACTGGACAATCATCCAGGGCGAGGTGG
ATCCATTCCAAGGTGGCACTAGTCGCTGCAGCCGCATTCGGCCGACCGAA
AGCTGGGCCACCTCTCATACCATTGGGGGGGTCGGGCCAGCGT
UFO02984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub37C-RB | 1628 | CG17566-RB | 75..1132 | 9..1077 | 4930 | 98 | Plus |
| gammaTub37C-RA | 1521 | CG17566-RA | 75..1132 | 9..1077 | 4930 | 98 | Plus |
| gammaTub23C-RA | 1850 | CG3157-RA | 197..995 | 36..835 | 1485 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19184633..19185225 | 851..259 | 2950 | 99.8 | Minus |
| 2L | 23513712 | 2L | 2973432..2974003 | 264..835 | 1045 | 78.8 | Plus |
| 2L | 23513712 | 2L | 19185332..19185534 | 260..58 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 19184419..19184575 | 1010..850 | 545 | 95 | Minus |
| 2L | 23513712 | 2L | 2973166..2973350 | 58..242 | 400 | 81.1 | Plus |
| 2L | 23513712 | 2L | 19185604..19185652 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:47 has no hits.
UFO02984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:49 Download gff for
UFO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 50..1096 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:38 Download gff for
UFO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 67..1113 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:03 Download gff for
UFO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 67..1113 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:03 Download gff for
UFO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19184378..19184573 | 852..1056 | 92 | <- | Minus |
| 2L | 19184633..19185223 | 261..851 | 99 | <- | Minus |
| 2L | 19185332..19185534 | 58..260 | 100 | <- | Minus |
| 2L | 19185604..19185658 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:38 Download gff for
UFO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19184378..19184573 | 852..1056 | 92 | <- | Minus |
| arm_2L | 19184633..19185223 | 261..851 | 99 | <- | Minus |
| arm_2L | 19185332..19185534 | 58..260 | 100 | <- | Minus |
| arm_2L | 19185604..19185658 | 1..57 | 92 | | Minus |
