UFO02990.5prime Sequence
1147 bp (1032 high quality bases) assembled on 2009-02-18
> UFO02990.5prime
CAGTCGACATGTACAACGACGAGGTGCGAACGCCGCAAGCCCTCAAGAAT
CGATACATTACAAATGTGAACGGATTGAAGTGCCGGGCGCGCCGTAACAG
CCACTCGAACAGCAGCAACTCGTCGGCGGCGTCGGCAACGCCAACGAATG
GCGGCAAAGAAAATGGAAAATACAGCCCCCAGATGTCGGGAAATGTGTGC
ACCCCGCCCCCGAAAAGGCTGCACAAGGTGCGGAATCCCTTCGAAGGAGC
GATGGCCGATCGTTTACACCTGCCACTGATCGCCAGCCCCTCACTTTTCC
GCTCGCGGACACCCCAACTCTCGTCCACCCAGTTCGAGTGGAACATTGAC
GAGGTCTCCCAACTAAAACCCGCCGACGTGGAGCCCCATGAAACCCAGTT
CCACGATTCCCCCGATCCCGAGCAGGAATCCAAGGCCCAGTTGGCCATCA
GTGCCTTTTTCAAGGAGTCACTCATTGTGCCCAGTCCGGTGGATTGCCCA
TTGCGAAAACAGCGCATAATACTCAATTGCAGCGAGGACAACACTCCCAT
ATCGAATAAGTCGCGAAGGATGCGGGATTGCGAGGTGCAAACGGAACTTA
CTTTGCCGCCGATATTGCCAAAAGCCCTAGAGGATGCCCTGCGTCCGTAC
TTCCAGCCACATTTGGCTGGCCGCTTGTCTGGCAGGAGCAAGTCAAGTGG
TGGTCCCGACATCTTTAATAGTTCCATGCGCCGGAAACTCTTCGATCTGC
ACAATGTCATTGTTTTGGGCGAACAGGACACGGCAGAGCCATCGAGGTCC
ATGGTGGGCTCCAGTCCGCAGGCAAGCAAACAATGTTCGCTGGCAGACTG
TCGGATTCCGCATCCGGGGAAAGTAGCTTCGGCTGCCTTTCACCCATTAG
AAACCTATGCGGACTGCCGCCTGCACGCCCGATAATGGTACTTGCTCGGG
AAGAGGAAACTTCTAATGCACGAGCTGGAGCTGCCGTCGCCCATTGCCCG
TCGGAGCATCTCAGTCGGAGATTGCTGCACTCCAGTAAAAAATCAGCCGT
TACGAACAGACACGAACCGTTGTTCGAGCGCCACGGGCATTGAGTTTCAG
CCAGAATGGAGTTCCTCGCCAATGGGGCGCGAACTGGACATCGAATT
UFO02990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-RA | 2002 | CG6897-RA | 96..1228 | 9..1138 | 5140 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18623120..18623874 | 284..1034 | 3560 | 99.3 | Plus |
| 3L | 28110227 | 3L | 18622787..18623064 | 9..286 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:20 has no hits.
UFO02990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:47 Download gff for
UFO02990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 94..1123 | 9..1034 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:26 Download gff for
UFO02990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1125 | 9..1034 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:18 Download gff for
UFO02990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1125 | 9..1034 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:18 Download gff for
UFO02990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18622787..18623064 | 9..286 | 100 | -> | Plus |
| 3L | 18623123..18623874 | 287..1034 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:26 Download gff for
UFO02990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18615887..18616164 | 9..286 | 100 | -> | Plus |
| arm_3L | 18616223..18616974 | 287..1034 | 99 | == | Plus |
