UFO03005.5prime Sequence
1105 bp (1018 high quality bases) assembled on 2009-01-24
> UFO03005.5prime
CAGTCGACATGTCGAATACCTGGTGGTGGCTTTCAGTAGTGTTACTAATC
TTAGGGCTAATGCCTGGCATGAGTCAGCAGGCGGCCCTGGCCGAATCGGA
TTACTATACGGCCGGAGTGGTGGAGTTCAAACAGTCGATCTTAAGTCTAT
CGGCCTGGTCGGATTCCCTTGCTGGCTATGTGGAGATCATAAACTCTGAG
AACGCCAGTGCCACCGACATCATTGTGTTTCCCGAGAGCACACTGAACTC
CGCGGGTTCCACGACCTTTGTGCCCAATCCCGAGGATCAGATAAACCCGT
GTTTGAGTGACCCCAATGCCACCTACTATGAGGAGTTTCTGGTGACCCTG
TCGTGCGCGGCCCGCAATGCCAGTAAATACATTGTGATCAATCTGACCGA
GAAGCAAAAGTGCGAGGATATTCCCGAGGATACGAGGCCATGTGCATCTA
ACGGACTGAATGTTTTCAACACCAATGTAGTGTTCGATCGTCAGGGAGTC
GTGGTGTCCAGGTACCGAAAGGTTCATCTCTATGGTGAAGCAAAGAACAG
CACTTTTCTGCCCGAGCTGATCACCTTCGAGACAGACTTTGGGGTCACCT
TCGGTCATTTCATCTGCTTCGACATCCTGTTCTACACTCCCGCCCATCAA
CTCATCGTGGAGCAGGGTATTACGGACTTCGTGTATCCGGCCATGTGGTT
CTCCCAACTGCCCTTCCTCACGGCTGTTCAGACGCAACAAGGTTGGGCCT
ATGCCAACGATGTGAATCTCCTGGCGTCTGGAGCCAGTCGTCCCTCCATT
GGCAATAGTGGATCGGGCATCTATCACGGACGTTCCGGCACTTTGACCAG
TGTCATGCGCCAGGACTCCGGCGAGAGGGCCATCTATGTGGCCCAAGTGC
CCAAGTATACTCGCAGTAGATCCCTGAGAAACGTGCGAAGAGAGTCTACA
GAGATCCAACCCGTCAGTGCCTCAGCTCGAGTTTCTACATGAGGGCGATT
ACGTGAAGACTATGAGTCTGACTGCCTCAAGTGACGAGGGACTAAGGTGC
TACAATAGAACATCTGCAGGCAGCTTTTGCTGTAACTCGACTACTTGAGA
ATCCT
UFO03005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vanin-like-RA | 1864 | CG32754-RA | 14..1113 | 5..1087 | 4965 | 97.7 | Plus |
| CG32751-RA | 1603 | CG32751-RA | 187..920 | 171..904 | 2605 | 90.3 | Plus |
| CG32751-RB | 1758 | CG32751-RB | 187..944 | 171..904 | 2360 | 87.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6201764..6202409 | 723..78 | 3230 | 100 | Minus |
| X | 23542271 | X | 6197862..6198412 | 721..171 | 2350 | 95.1 | Minus |
| X | 23542271 | X | 6201065..6201387 | 1032..719 | 1080 | 94.7 | Minus |
| X | 23542271 | X | 6202470..6202546 | 81..5 | 370 | 98.7 | Minus |
| X | 23542271 | X | 6197447..6197610 | 904..741 | 265 | 77.4 | Minus |
| X | 23542271 | X | 6218525..6218578 | 634..581 | 195 | 90.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:31 has no hits.
UFO03005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:45 Download gff for
UFO03005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vanin-like-RA | 10..1128 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:37 Download gff for
UFO03005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vanin-like-RA | 10..1128 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:32 Download gff for
UFO03005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vanin-like-RA | 10..1128 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:32 Download gff for
UFO03005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6200985..6201382 | 724..1100 | 92 | <- | Minus |
| X | 6201764..6202406 | 81..723 | 100 | <- | Minus |
| X | 6202471..6202550 | 1..80 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:37 Download gff for
UFO03005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6095018..6095415 | 724..1100 | 92 | <- | Minus |
| arm_X | 6095797..6096439 | 81..723 | 100 | <- | Minus |
| arm_X | 6096504..6096583 | 1..80 | 96 | | Minus |
