UFO03006.5prime Sequence
1100 bp (947 high quality bases) assembled on 2009-01-24
> UFO03006.5prime
CAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTGTTGACCGG
ATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAGCAATGGTT
CCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGCCTACCTGT
ACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCAAGCCCTTC
GAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTGCTCCTCAG
CTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGGCCACTACA
ACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTTCCATGAGG
ATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACGGAGCTGTT
GGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGATCTCCTTCC
TCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCATTGGGGTC
AAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATTAACTCCTT
CATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGATGGGACCCA
AGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCCTGCAGATT
GTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAGTTCCAGCC
CAACTGCAACTTCCCCAAGTCCATTGCCGCACTCTGACCTTCAATGCTGG
ACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCACTACAAGAAGGA
GGCGGCTGCCCAGGCCAAGCTGGCGCCGAAAAAGGAGGCAAGCTTTCTAG
ACCATTCCGTTTGGCGGCGCGGGCCCAGGTAAGTGGTCATAATCTTAATC
ATAATCATAATCATAATCACAACTAAGCCCTAGAGAATTCTGGTCATGAC
TAGTGCTTGAATCCTCACCATAAAAAAACGCCCCGGCGCAACCGAGCCTT
TCTGAACAATTCAGAATGGAATCTCTAAGGTCATATACTGGATTTTATCA
ACAGGATTCCAAGCGAGCTCATTTTCATTTACCGCCCCGCCCTGCCACTT
UFO03006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5326-RA | 1694 | CG5326-RA | 320..1150 | 9..837 | 4090 | 99.6 | Plus |
| CG5278-RA | 1722 | CG5278-RA | 526..804 | 381..659 | 420 | 77.6 | Plus |
| CG2781-RA | 1974 | CG2781-RA | 921..1042 | 511..632 | 290 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22532967..22533269 | 652..350 | 1515 | 100 | Minus |
| 3R | 32079331 | 3R | 22533336..22533595 | 350..91 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 22532718..22532906 | 837..651 | 830 | 98.4 | Minus |
| 3R | 32079331 | 3R | 22533684..22533767 | 92..9 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 22559611..22559879 | 649..381 | 415 | 77 | Minus |
| 3R | 32079331 | 3R | 7982865..7982954 | 632..543 | 285 | 87.8 | Minus |
| 3R | 32079331 | 3R | 9813349..9813433 | 383..467 | 215 | 83.5 | Plus |
| 3R | 32079331 | 3R | 9816469..9816540 | 467..396 | 210 | 86.1 | Minus |
| 3R | 32079331 | 3R | 4444113..4444219 | 649..543 | 205 | 79.4 | Minus |
| 3R | 32079331 | 3R | 22555689..22555773 | 555..639 | 185 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-28 21:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 652..728 | 121 | 65.4 | Plus |
UFO03006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:44 Download gff for
UFO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5326-RA | 314..1160 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:25 Download gff for
UFO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5326-RA | 312..1158 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:31 Download gff for
UFO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5326-RA | 312..1158 | 1..843 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:31 Download gff for
UFO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22532710..22532906 | 651..843 | 96 | <- | Minus |
| 3R | 22532969..22533268 | 351..650 | 100 | <- | Minus |
| 3R | 22533336..22533593 | 93..350 | 100 | <- | Minus |
| 3R | 22533684..22533775 | 1..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:25 Download gff for
UFO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18358432..18358628 | 651..843 | 96 | <- | Minus |
| arm_3R | 18358691..18358990 | 351..650 | 100 | <- | Minus |
| arm_3R | 18359058..18359315 | 93..350 | 100 | <- | Minus |
| arm_3R | 18359406..18359497 | 1..92 | 96 | | Minus |
