UFO03007.5prime Sequence
1127 bp (1003 high quality bases) assembled on 2009-02-18
> UFO03007.5prime
CAGTCGACATGCATTCGGCTGGACTACTGATGCTAACCGTGGCTGGATAT
TTCACATCGGGTATTCCTGGCAATACGGCTTCCTCGGACGTCGCCTACCT
GACGCCGGGCACATACATCAATTTGTCGGAGAACATCTTGGGACTGCAGA
CTCTGCGCACGTTCTGCTATCCGGGTAAACGGCTGACGGTGTCAAGTCTC
TTCGAGACTGTGGAGTTCGTCCTGGCCATCGGGAGCGATGATTATTCCCA
GTACGGTGGGAAGACGCCGGAGGAGGTGTTGCAGCACTACAAGGACAAGC
AATCGCTGTTCAGCATCACCCTGTTCGCGCAGAAGCGCCAGCTGCTGCAG
CTCTCGCCCTTCGAGCAGCAGTGCATCGGGATTTCCTCCCGCCAGGCGTA
CACCGTCATTCTGAATAGCATTCCGCTGGATCTGTGGCGTCTCGCACAGT
TCGCCGTCGGCATACTGATCCTCTTCAGCGCCCGGCGGCTAGCAAAGAAC
AGTGTGTTCTACTATCTGGTCGGCATTGTCATCGGCATATGCGCCTCCCT
GCTGGTGGTCATCTATTTGGCCGCCAAACTCTTTCCGCGACGTACCATGA
TGTATGGCGTCCTAATTGGCGGCTGGACCATTGGCTTCTATGTGATCAAA
CAGCTGGCGGACAATCTGCGTTTGATTCTGATCACCTACCGCGACCATGT
GCTGGGCTATCTGGTGATCACCGGACTGATCTCGTTCCTGATCTGCTATC
GCATTGGTCCGCCCAAGAATCCTCGATCGCAAACCATCGTCATGTGGGTG
CTGCAGGCCATTGGCGCCGTTATGGCTTACTTCAGCAGCTGGCACACCAG
CGCCGTGATCTTCATCATGGTGCTGGTCTTTGTGGCCACTACTTCCCCAT
TTCGTGGAAGAACCAGATCAAGTTCATGTATCCGCCGCCGTTTTCCGCCT
AAAGAGGCGCATGCCTCACCCAAGAGGAAGTACGAACAGCAGAACGGCCG
TGGAGACCTCTGAATTCGCTGCGAACCTGCGCAAGTAAGTCAACAGATCG
GATGCACGCAGGGGCGGGGATAGCCACTGCTGGATTCTTTCTGCTCTTCC
TCGTTCTCCATGGACACGCACTCGGAC
UFO03007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9723-RA | 1729 | CG9723-RA | 149..1209 | 9..1071 | 4950 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16654136..16654867 | 740..9 | 3660 | 100 | Minus |
| X | 23542271 | X | 16653767..16654069 | 1046..740 | 1075 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:33 has no hits.
UFO03007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:43 Download gff for
UFO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 142..1202 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:05 Download gff for
UFO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 145..1205 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:42 Download gff for
UFO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9723-RA | 145..1205 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:42 Download gff for
UFO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16653744..16654068 | 741..1067 | 94 | <- | Minus |
| X | 16654136..16654871 | 1..740 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:05 Download gff for
UFO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16547777..16548101 | 741..1067 | 94 | <- | Minus |
| arm_X | 16548169..16548904 | 1..740 | 99 | | Minus |
