UFO03008.5prime Sequence
1095 bp (1003 high quality bases) assembled on 2009-02-18
> UFO03008.5prime
CAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCCCCATCGGG
GGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAATCAATCGG
CGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGAGTATGGTC
GAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTCAAAATCCC
AAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCCGATTCCAA
AGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGTACTCCTGC
CCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCACAAAGGAT
GAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAGTCTGGCGT
GGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGCGGAGGAGC
TCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACGAGTTCATT
TCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATCCGCTACGT
CATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGTAGTGTGGT
TAACAGTCTGCACGGCTGCAGTGGGATACTTGAAGGATGGGCCCTTCAAG
CGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTTCGGCGTTTTGTCCAG
CGCTATATCGGCGGTTATCACCTACCACAATGAGGATAATCGCCCGTCAT
CCGGTATTTGTGTTGCCAATCACACCAGTCCCATTGATGTGCTGGTCCTG
ATGTGCGACTCGACCTACTCGCTGATTGGCCAACGCCATGGCGGCTTTTT
GGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACATTTGGGTTT
GGAGCGCGGCGAGGCAAAGGATCGGTCATTTGGTGGCCGAGCGACTGAAA
CAGCACGGGTCTGATCCGAACAACCCACCGATTCTTATTCTTTCCGGAAG
GGAACTGACTTCACCACCCGTCCGTCATGCAGTTCAAGAAGAGAGCTTCG
AGATTAGCGGCGGCATCTACCGCGGCCGTAAGATACAGACCGAGG
UFO03008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-RB | 1660 | CG3209-RB | 151..1210 | 9..1071 | 4910 | 97.8 | Plus |
| CG3209-RC | 1751 | CG3209-RC | 151..734 | 9..592 | 2920 | 100 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 151..734 | 9..592 | 2920 | 100 | Plus |
| CG3209-RC | 1751 | CG3209-RC | 958..1213 | 813..1071 | 860 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24069998..24070244 | 346..592 | 1235 | 100 | Plus |
| 2R | 25286936 | 2R | 24071991..24072224 | 591..824 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 24069737..24069943 | 142..348 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 24072704..24072948 | 824..1071 | 700 | 89.2 | Plus |
| 2R | 25286936 | 2R | 24069200..24069334 | 9..143 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:27 has no hits.
UFO03008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:43 Download gff for
UFO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 286..1341 | 3..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:53 Download gff for
UFO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 146..1201 | 3..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:48 Download gff for
UFO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 146..1201 | 3..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:48 Download gff for
UFO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24069195..24069334 | 3..143 | 97 | -> | Plus |
| 2R | 24069739..24069942 | 144..347 | 100 | -> | Plus |
| 2R | 24070000..24070242 | 348..590 | 100 | -> | Plus |
| 2R | 24071991..24072224 | 591..824 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:53 Download gff for
UFO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19956718..19956857 | 3..143 | 97 | -> | Plus |
| arm_2R | 19957262..19957465 | 144..347 | 100 | -> | Plus |
| arm_2R | 19957523..19957765 | 348..590 | 100 | -> | Plus |
| arm_2R | 19959514..19959747 | 591..824 | 100 | -> | Plus |
