UFO03010.5prime Sequence
1119 bp (1000 high quality bases) assembled on 2009-01-24
> UFO03010.5prime
CAGTCGACATGTCTCGATCATTGAGTCGCGTATTGGGTACCATCTGGGCG
CCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAACAGACTGAA
CGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCCGGTGGCTA
GATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGATACTTTAAG
ACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAATAGTTTGGA
GAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCGCTTCTATC
TGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCACCGTCGGT
CTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGTCCCAATAC
GGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCTGCTTATCC
GTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCACAGCAGTGC
ATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATCGAAATGGG
CGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCGCCTGCTAT
CGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGACGTCCATTC
TTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCACGCTTCCG
TGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGTGATTTCCG
CCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATAGCACAGCG
CCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCGCCGCACAA
GGTTGCCCATGCAAGCTTTCTAAAACATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATATCACAACTAGGCCT
AGGAGATCCTGGTTCATGACTAGTGCTTGATCCTCACCAATAAAAAAACG
CCTGGCCGGCAACCGAACGTTCTGAACAAATTCAAATGGAGTTCTGAGTC
ATTACTGAATCTAATCAACAGGAGTCCAAGGCGAAGCTCTCGAATATCAA
AATTAGGCCTCTGCCTCCT
UFO03010.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12118-RB | 1260 | CG12118-RB | 237..1088 | 9..860 | 4260 | 100 | Plus |
| CG12118-RA | 1277 | CG12118-RA | 254..1105 | 9..860 | 4260 | 100 | Plus |
| CG12106-RA | 1372 | CG12106-RA | 961..1262 | 860..559 | 1510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9195551..9196102 | 560..9 | 2760 | 100 | Minus |
| X | 23542271 | X | 9194922..9195223 | 860..559 | 1510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:54 has no hits.
UFO03010.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:46 Download gff for
UFO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12118-RB | 284..1141 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:20 Download gff for
UFO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12118-RA | 254..1111 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:15 Download gff for
UFO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12118-RA | 254..1111 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:15 Download gff for
UFO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9194916..9195221 | 561..866 | 99 | <- | Minus |
| X | 9195551..9196102 | 9..560 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:20 Download gff for
UFO03010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9088949..9089254 | 561..866 | 99 | <- | Minus |
| arm_X | 9089584..9090135 | 9..560 | 100 | | Minus |
