UFO03017.5prime Sequence
1125 bp (993 high quality bases) assembled on 2009-02-18
> UFO03017.5prime
CAGTCGACATGCCCAAAATCCATGTGAAGAAGCCGCTGGCGGGACTGGTC
ATACGGAATCGAGCCCACAAGAGCAAGAGTGTCTTCACGAGTTCCGGAAT
CGGGGAGCCGAGTGTTCATCATGCGCTGGTTGTGATATTTCTAGAGTTCT
TCGCCTGGGGCCTGCTGACGATGCCCATAATATCGACTCTCAACCAGACG
TTCCCGGATCACACATTCCTAATGAACGGCCTGGTCATGGGCATCAAGGG
GATCCTGTCGTTCCTGTCGGCGCCTCTGATCGGCGCCCTTTCGGACATCT
GGGGCCGAAAGTTTTTCCTATTAGTCACAGTATTCTTCACCTGCCTGCCC
ATACCGCTGATGTCCATCAATACGTGGTGGTTCTTTGCCATGATCTCAAT
AAGCGGCGCCTTCGCAGTCACCTTCTCGGTGGTGTTTGCCTACGTGGCGG
ACGTCACCACGCCGGAGGAGCGATCAAAGGCCTATGGCCTGGCCTCGGCC
ACATTTGCCGCCAGTCTGGTCATCTCGCCGGCTCTGGGCAATGCCCTGAT
GGAGATGTACGGAGACACGCTGGTCGTGGCCCTCTCCACGGCCATTGCGC
TGCTCGATGTATTCTTCATACTGGTGGCCGTGCCGGAGAGTCTATCAGAG
AAGATGCGGCCAGCCTCCTGGGGTGCGCCTATCAGCTGGGAGCAGGCGGA
TCCATTTCTGGCCCTGCGCAAAGTGGGCACCGATAAGACCGTGCTGATGC
TGTGCCTCACCGTGCTGTTATCCTATCTGCCCGAGGCAGGGGAGTATTCC
TGCATGTTTGTCTATCTGAAACTGAAGATGGGCTTTAACTATGTGGAGGT
CTCGGTCTTTATAGCCATAGTAGGCATCCTCAGCATCACGGTGCAAGTCA
CACTCGGCTCCTTCATGCAAGTGTTTGGAGCCAAGCGCACGATTATAATG
GGCCTAACCCTGGAAATCGTGCAACTGCTGTGGTACGGCTTTGGAGATCA
AAGTGATGATGGGTCGGCTGCGTTGTGCTCCCTAGCGCTCCATCCCAATC
CCGCCATCATGCTTTGTTCCTTATGCCGCTCCAGAAATCAGGCCTGTCAG
GAACGATACAGACAGAAGGCTCGGC
UFO03017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 2510 | CG11537-RC | 550..1613 | 9..1065 | 4980 | 98.5 | Plus |
| CG11537-RG | 3348 | CG11537-RG | 1468..2451 | 89..1065 | 4580 | 98.4 | Plus |
| CG11537-RE | 3214 | CG11537-RE | 1168..2151 | 89..1065 | 4580 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3130511..3131037 | 711..185 | 2635 | 100 | Minus |
| 3L | 28110227 | 3L | 3130239..3130448 | 919..710 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 3131109..3131205 | 185..89 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 3142828..3142908 | 89..9 | 405 | 100 | Minus |
| 3L | 28110227 | 3L | 3130104..3130178 | 994..920 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:44:50 has no hits.
UFO03017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:39 Download gff for
UFO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 539..1532 | 1..994 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:21 Download gff for
UFO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 542..1535 | 1..994 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:36 Download gff for
UFO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 542..1535 | 1..994 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:36 Download gff for
UFO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3142828..3142915 | 1..89 | 95 | | Minus |
| 3L | 3130104..3130178 | 920..994 | 97 | <- | Minus |
| 3L | 3130239..3130447 | 711..919 | 100 | <- | Minus |
| 3L | 3130512..3131036 | 186..710 | 100 | <- | Minus |
| 3L | 3131109..3131204 | 90..185 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:21 Download gff for
UFO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3130104..3130178 | 920..994 | 97 | <- | Minus |
| arm_3L | 3130239..3130447 | 711..919 | 100 | <- | Minus |
| arm_3L | 3130512..3131036 | 186..710 | 100 | <- | Minus |
| arm_3L | 3131109..3131204 | 90..185 | 100 | <- | Minus |
| arm_3L | 3142828..3142915 | 1..89 | 95 | | Minus |
