UFO03019.5prime Sequence
1137 bp (1012 high quality bases) assembled on 2009-02-18
> UFO03019.5prime
CAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACTACACGTCG
CTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTGCATGCCAT
ACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGCGCACGGCC
TGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCCGGCGCATC
AACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTGGGGGGCAA
TGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGATTGCCTCT
TCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCAATGTGCTG
GAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTGCCGCCACT
GCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTCAGAGGGAT
GCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGAAGACAGAG
CCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATACAAGCCCAC
AGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAGAGCTACTG
CCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACCACATCCTG
CCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGTGGCCAGAC
GGACGCCGAACGTTCGGCGAGCAAAAGAGACGAGGGCGACGTAGTATACT
GCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGCTGCGCAAGG
AGAACAGTTTGCTCGAGCAGCAGAACGACGCCTGTCTGCAGTCGCTCGTG
CGCAAGGAGAAGCAGTTCCTGACATGAACATAACTTTCTGGCGTATATGG
AGCGGCGGAGCAGTGCTGGCGTTATAAAGCAACGACCATCAAGCTGGAAC
CAGCAAGCTTTCTAGACCATTCGTTTGGCGCGGCGGGCCCAGGTATGTCA
ATCATATCATATCAAATCATATCACACTAGCTAGGAATCTGTCATGACTA
TGCTGATTCTCACATAAAAACGCCGCGCACGACGTTTGACAATCGATGAA
TTCAAGTCTACCGATCTACCAGGATCAGCGAGTCGAT
UFO03019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14005-RA | 1396 | CG14005-RA | 90..1040 | 9..952 | 4580 | 99.3 | Plus |
| CG14005-RB | 1297 | CG14005-RB | 90..1034 | 9..952 | 4480 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5800873..5801608 | 952..224 | 3335 | 98.8 | Minus |
| 2L | 23513712 | 2L | 5801671..5801886 | 224..9 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:41 has no hits.
UFO03019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:38 Download gff for
UFO03019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14005-RA | 84..1034 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:33 Download gff for
UFO03019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14005-RA | 90..1040 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:58 Download gff for
UFO03019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14005-RA | 90..1040 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:58 Download gff for
UFO03019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5800873..5801608 | 224..952 | 99 | <- | Minus |
| 2L | 5801672..5801886 | 9..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:33 Download gff for
UFO03019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5800873..5801608 | 224..952 | 99 | <- | Minus |
| arm_2L | 5801672..5801886 | 9..223 | 100 | | Minus |
