UFO03020.5prime Sequence
1069 bp (964 high quality bases) assembled on 2009-01-24
> UFO03020.5prime
CAGTCGACATGGACATAGGCACTATTGAGCTGAGCGTGGAGGCGCTGATA
GGATCCCTGCTGGCCCTCAGTATCCTCTTTGCCTTCTGCCGCAGCCTGCT
TTCCGAGGACTTTGTGAGCACCTTCAAAACACGTCACAGCTGGAAATCAA
TAAAAGTGTTGGAACAGGCCTGCTTCTGCAATGTGTGCGAGATCCTGCTA
ACCCCCTCCGCAGGACTCTTTTGCGACTGCTGCGGCCTGTGCACCCATGC
CACGCCCCCTTGCCAGCGGAGGGCGGACAGGGAGTACCGGTGCAAGGACA
AGTGGTTGCGCAACGAGTCCTCCGTGCGGCACTTGTGGGTGCATGGCAAT
CTGCCTATGGGAGTGCATTGTGCCGACTGCAACGAGGAGGTGGATCACCA
TGTCAGCACCGATCCAGGATTATACGGATGGCGATGTGCATGGTGTCAGC
GGTGCTATCATAACGATTGCTACACTCGCGCTGACTCCATGGAAGCCTGC
GACTTGGGCGAGTTCAAGGACATGATCTTCCCGCCATACAGCTTTGTGGC
CGCCCGAACCAGAGACTCGATGCGGCTCCACTTGGCCAGCATTACGCCGC
CAGACATTGAGAACTGGGAGCCGCTTATTGTGATCGCCAACACCAAGTCG
GGCAGCAGTACGGGTGCCAATGTGTTGTCCCTGCTCCGCGGTTACCTGCA
TCCGCTGCAGTGATGGAACTGGGCTCGAGGGGTCCGCAGACGCCCTGCAG
TGGGCCGCCAAAGCCAGTCCTCGCCCGTGTCGCATACTGGTGGCGGGGCG
GCGATGGCACCATCGGTTGGTGCTCATACAATCTATACGCTGAATATCAA
GCCCCAGCCCTCGGTGGCCATCATGCCGCTGGGCACCGGCAACGATTTGT
CGCGAGTTCTGGGCTGGGGAGCAGAGCCGCCCTCTGTCTCGACCCGGTGA
AGATCTAGGAGCATACGGGAGCACGTTCGTGATCTCGACGCTTGACTGCA
AATAGAGAACTGCACTATCGACTGCTATTCGAGGCATCCCACCGAGACGA
TTCATGGTTACAACCTATT
UFO03020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgkepsilon-RB | 1926 | CG8657-RB | 115..1186 | 8..1064 | 4890 | 98 | Plus |
| Dgkepsilon-RA | 2010 | CG8657-RA | 199..1270 | 8..1064 | 4890 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12757960..12758873 | 166..1064 | 3705 | 97.5 | Plus |
| 2R | 25286936 | 2R | 12757744..12757904 | 8..168 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:11 has no hits.
UFO03020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:28 Download gff for
UFO03020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 192..1274 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:21 Download gff for
UFO03020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 192..1274 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:11 Download gff for
UFO03020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 192..1274 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:11 Download gff for
UFO03020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12757737..12757903 | 1..167 | 98 | -> | Plus |
| 2R | 12757962..12758877 | 168..1069 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:21 Download gff for
UFO03020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8645242..8645408 | 1..167 | 98 | -> | Plus |
| arm_2R | 8645467..8646382 | 168..1069 | 97 | | Plus |
