UFO03023.5prime Sequence
1052 bp (998 high quality bases) assembled on 2009-02-18
> UFO03023.5prime
CAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAACCCAGCAT
GGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCACCGCCATAT
GCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCGGGAAGATT
CCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTCCAGCTGAA
AGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAAACGCAATC
AAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGATGACGAAG
GGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAACGAAGCGT
CCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTATTTTGAGAA
TGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCACGTTCGCCA
AAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCCGCGAATTT
CGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCGGGAAAATT
GACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAAGCACAATG
ATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTACTTCACAG
CCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTGAATAAGCC
GGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAACACGGTAG
TTTTCATCCTGGCCAAAGAGCACAATCTGAAGAACCTGCGAACCATTCAC
AGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGGACTGCTGA
AAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCGCCAGTGCAAAAGGA
ATACGTTTGCCGCGTTGAAGACGCTTTCCAGATGGCATATTGAATGCAAT
GAGAAATCGACGTCGTGAGCTACAAATAGTTGTTTGTAGTTTCACCGAAG
GGCAGGACTGTAGACCAAATTTAAAAGAATCCGGGGAGGTGGGGAGATGG
GA
UFO03023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RluA-2-RC | 2001 | CG6187-RC | 314..1356 | 9..1043 | 4920 | 98.7 | Plus |
| RluA-2-RD | 1880 | CG6187-RD | 181..1223 | 9..1043 | 4920 | 98.7 | Plus |
| RluA-2-RA | 2013 | CG6187-RA | 314..1356 | 9..1043 | 4920 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10481347..10481570 | 402..625 | 1120 | 100 | Plus |
| 2L | 23513712 | 2L | 10477386..10477592 | 9..215 | 1035 | 100 | Plus |
| 2L | 23513712 | 2L | 10481762..10481983 | 713..932 | 995 | 98.6 | Plus |
| 2L | 23513712 | 2L | 10481097..10481286 | 215..404 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 10481619..10481712 | 623..716 | 470 | 100 | Plus |
| 2L | 23513712 | 2L | 10465286..10465378 | 716..624 | 210 | 81.7 | Minus |
| 2L | 23513712 | 2L | 10482051..10482148 | 940..1031 | 195 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:16 has no hits.
UFO03023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:42 Download gff for
UFO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-2-RA | 264..1320 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:24 Download gff for
UFO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-2-RA | 305..1361 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:17 Download gff for
UFO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-2-RA | 305..1361 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:17 Download gff for
UFO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10477377..10477592 | 1..215 | 98 | -> | Plus |
| 2L | 10481098..10481284 | 216..402 | 100 | -> | Plus |
| 2L | 10481348..10481570 | 403..625 | 100 | -> | Plus |
| 2L | 10481622..10481709 | 626..713 | 100 | -> | Plus |
| 2L | 10481763..10481983 | 714..932 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:24 Download gff for
UFO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10477377..10477592 | 1..215 | 98 | -> | Plus |
| arm_2L | 10481098..10481284 | 216..402 | 100 | -> | Plus |
| arm_2L | 10481348..10481570 | 403..625 | 100 | -> | Plus |
| arm_2L | 10481622..10481709 | 626..713 | 100 | -> | Plus |
| arm_2L | 10481763..10481983 | 714..932 | 98 | -> | Plus |
