UFO03027.5prime Sequence
1117 bp (1018 high quality bases) assembled on 2009-02-18
> UFO03027.5prime
CAGTCGACATGTCGCTAGCCGATGAGCTTTTAGCCGATCTCGAGGAAGAC
AATGACAATGAGCTGGAGGAGGAGGATTCGGAGATGGCCAGTGCAGAGGA
CGAGAGCTTGCTGGCGGAGAAGCTGGCTAAGCCGGCTCCCAATCTGATGG
ACGTGGATGTAACCGTGCAGTCGGTGCGGGAACTGTGCAAGCTGCGCGAC
TCTGAGCGCCTGAAGAACACGCTGCAGCAGATCGAGCACTATGCCAGTCG
CCAGAGAACTGCAGCCGAAATGCTGGGATCCGTAGAATCCGATCCAGAGT
ACTGCCTCATCGTGGACGCTAATGCCATAGCTGTGGACATTGACAACGAG
ATCTCCATTGTGCACAAGTTCACCAAGGAGAAGTATCAGAAGCGATTCCC
CGAATTGGACTCCCTGATCGTGGGTGAAATCGAGTACTTGCTGGCGGTCA
AGGAGCTGGGCAACGACCTGGACCAGGTCAAAAATAACGAGAAGCTGCAG
GCTATTCTCACGCAGGCCACCATTATGATTGTGTCAGTCACGGCGTCCAC
CACACAGGGAACCATGCTGACACCGGCGGAGAAGGCAAAGATCGACGAGG
CCTGCGAAATGGCCATCGAACTGAATAACTTCAAGTCCAAGATCTACGAG
TATGTGGAAAGTCGCATGACCTTCATAGCCCCAAATCTTTCCATGATTGT
TGGAGCATCGACGGCGGCTAAACTCTTGGGCATTGCTGGTGGCCTTTCCA
AATTATCCAAAATGCCGGCCTGCAATGTTCAGGTGTTGGGTGCACAAAAG
AAAACCCTCTCGGGCTTCTCACAAACGCAGATGTTGCCGCACACTGGCTA
TGTGTACTACTCACAGATTGTGCAGATACTGCGCCAGATCTGCGACGCAG
GCAGCTCGCTTGTGGCCGCCAAGTCCGTGCTGCTGCTCGTGTTGATGCCT
GTCATGAAGTGTCCACGGGGAGATTGGACTGCGCTTCAGGAGGATGTGGA
AAAGAAGCTGGACAGCTGCAGGAGCCGCCGCCGGGAAGTTCATAAGCCGC
TGCCAACCATCAGGAGCAGAAAAGCAGGGAGCACGCGTGCCAATAAGAAC
AATTGCCTGACAGATTC
UFO03027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp31-RA | 1862 | CG6876-RA | 71..1125 | 9..1054 | 5050 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15159325..15159776 | 108..559 | 2260 | 100 | Plus |
| 3L | 28110227 | 3L | 15159838..15160332 | 559..1045 | 2075 | 98.4 | Plus |
| 3L | 28110227 | 3L | 15159170..15159268 | 9..107 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:19 has no hits.
UFO03027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:22 Download gff for
UFO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6876-RA | 80..1156 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:01 Download gff for
UFO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp31-RA | 63..1139 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:19 Download gff for
UFO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp31-RA | 63..1139 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:19 Download gff for
UFO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15159162..15159268 | 1..107 | 96 | -> | Plus |
| 3L | 15159325..15159776 | 108..559 | 100 | -> | Plus |
| 3L | 15159839..15160320 | 560..1034 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:01 Download gff for
UFO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15152262..15152368 | 1..107 | 96 | -> | Plus |
| arm_3L | 15152425..15152876 | 108..559 | 100 | -> | Plus |
| arm_3L | 15152939..15153420 | 560..1034 | 98 | == | Plus |
