UFO03030.5prime Sequence
1055 bp (987 high quality bases) assembled on 2009-02-18
> UFO03030.5prime
CAGTCGACATGACGACGGCCGTGCTGGGAGGCGGATTGAGTGGACTATCC
GCCGGATACTACCTGTTGCGGCGATTCGGGAAGCCGCTGACCATCTACGA
GGCCTCGCCCCGTGTGGGCGGATGGGTGCGGTCGGAGAATCGCAAGGATC
GCAACTTCATCTTCGAGAGCGGACCGCGAACCATACGCCCAGTTGGTGAG
CCAGGTGCCAATACGCTAGAATTGGTGGAGGATCTGAAGCTGGAGGTGAC
TCCCATTCGACGCAGTCATGTCGCAGCACGCAACCGAATGCTGTATGCCA
AGGGACAGCTCTGCATGCTGCCCAACAGTCCCAAGGGTCTCTTCGGCGTC
CTGCCTCCCTTCACGAAGCCGCTATACAAAGCGGTTCTTCGCGATCTGTT
CACAGCAAGCAAGAAAGCGAAGCTGGAGGATGAGAGCATCTACAGTTTCG
CTGAGCGGCGGTTTGGTAAGGAGATAGCCGACTACGCCATCAGTCCCATG
ATCTGCGGTATTTGCGCCGGTGACGCGCGAGAAATAAGTGTGCGCTTCCT
GATGGAGGGGCTCTTTGAAAAGGAACAGAAGTACGGAGGAGTGCTCAAGG
GCACACTCATTTCCCGCTTTGAGAAGAACAAGACCAAGGACACCAAGGAT
GGACTATTTGCCGAAAGACAGCCCAAGCTGTATGCGCAGGCGGTAAAGGA
GAAGTGGGCCATGTACGGGCTGAAAGGCGGTCTGGAGAACCTACCCAAAA
CTATGCGAAAGTACTTAGGTGAGCGGGATGTGAACGTGCAGCTAAGCAAC
GAATGCCGGAACCTGACCTTCAGCAGCTCGGGGGTTCGAATGACATCAAG
GATGCCGAAGTTCCGTGGAGCATGTGGTCAGCTCCCTGCCCGCCTACAAA
CTCGCGCCCTGGTAAGCAGCAGCATCCCTCGCTGAGCGCCCACTTTTGAG
CATCCGTACGTGGAGTGCTGGTAGTGACATGAGTTCCCCGCAAGCTTACT
CCAACAGACGGCTTGGAATGCTAGTTGCGCCATGAAAGTTACCCTCTGCT
CGGCG
UFO03030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppox-RA | 1655 | CG5796-RA | 126..1186 | 8..1055 | 4825 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24660750..24661726 | 977..8 | 4520 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:08 has no hits.
UFO03030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:19 Download gff for
UFO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 117..1186 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:20 Download gff for
UFO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 117..1186 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:09 Download gff for
UFO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppox-RA | 117..1186 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:09 Download gff for
UFO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24660666..24661731 | 1..1055 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:20 Download gff for
UFO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20486388..20487453 | 1..1055 | 97 | | Minus |
