Clone UFO03032 Report

Search the DGRC for UFO03032

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:30
Well:32
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5902-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03032.5prime Sequence

412 bp (-105 high quality bases) assembled on 2009-02-18

> UFO03032.5prime
CAGTCTCCATGGCGTCCAAGGAAAACATTGCTGACAACATGGAGAAGTTC
TCGCTTAAGAGCCCGACCCTAGATTCTGACGGATAGCACCAACAACGTTC
GCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGCCAAGGAGTCC
TCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCATGGAGAAGTC
CGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGCGACCCTCCCC
GACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTGGCAGATGTAC
AAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGGATTTGTCCAA
GGACCTTACTGATTGGCACCCCCTGAAGGACGACGAGCGCCTTTGCCTCT
CGCACGTGCTTG

UFO03032.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-RA 1593 CG8975-RA 128..533 9..412 1840 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11984818..11985054 307..71 1140 98.7 Minus
2R 25286936 2R 11984205..11984312 412..305 480 96.3 Minus
2R 25286936 2R 11985216..11985266 59..9 255 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:30:04 has no hits.

UFO03032.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:18 Download gff for UFO03032.5prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 170..583 1..412 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:18 Download gff for UFO03032.5prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 120..533 1..412 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:22 Download gff for UFO03032.5prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 120..533 1..412 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:22 Download gff for UFO03032.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11984205..11984310 307..412 96 <- Minus
2R 11984819..11985067 60..306 96 <- Minus
2R 11985216..11985274 1..59 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:18 Download gff for UFO03032.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7871710..7871815 307..412 96 <- Minus
arm_2R 7872324..7872572 60..306 96 <- Minus
arm_2R 7872721..7872779 1..59 95   Minus