UFO03032.5prime Sequence
412 bp (-105 high quality bases) assembled on 2009-02-18
> UFO03032.5prime
CAGTCTCCATGGCGTCCAAGGAAAACATTGCTGACAACATGGAGAAGTTC
TCGCTTAAGAGCCCGACCCTAGATTCTGACGGATAGCACCAACAACGTTC
GCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGCCAAGGAGTCC
TCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCATGGAGAAGTC
CGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGCGACCCTCCCC
GACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTGGCAGATGTAC
AAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGGATTTGTCCAA
GGACCTTACTGATTGGCACCCCCTGAAGGACGACGAGCGCCTTTGCCTCT
CGCACGTGCTTG
UFO03032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnrS-RA | 1593 | CG8975-RA | 128..533 | 9..412 | 1840 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11984818..11985054 | 307..71 | 1140 | 98.7 | Minus |
2R | 25286936 | 2R | 11984205..11984312 | 412..305 | 480 | 96.3 | Minus |
2R | 25286936 | 2R | 11985216..11985266 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:04 has no hits.
UFO03032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:18 Download gff for
UFO03032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 170..583 | 1..412 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:18 Download gff for
UFO03032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 120..533 | 1..412 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:22 Download gff for
UFO03032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 120..533 | 1..412 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:22 Download gff for
UFO03032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11984205..11984310 | 307..412 | 96 | <- | Minus |
2R | 11984819..11985067 | 60..306 | 96 | <- | Minus |
2R | 11985216..11985274 | 1..59 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:18 Download gff for
UFO03032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7871710..7871815 | 307..412 | 96 | <- | Minus |
arm_2R | 7872324..7872572 | 60..306 | 96 | <- | Minus |
arm_2R | 7872721..7872779 | 1..59 | 95 | | Minus |