UFO03033.5prime Sequence
1160 bp (1026 high quality bases) assembled on 2009-01-24
> UFO03033.5prime
CAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCCAGCTGATG
GATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGCTCCTGGAT
AGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCTGTCGGGAC
CCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCTCTGTGATT
CCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGCATCAAGGT
GGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAATTCTGGGTG
GACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATCTGCGGAGT
CTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATCCTAATGGT
CTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTGGTGCGCCA
ACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATACCGGAGACT
CCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTGCAGGCCCT
CTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCTGAATGATA
TGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGAACGAGAAC
ATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTGGTCATTGT
GATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCATCGTGATCT
TCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCGACTCCAAG
CAGGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGCATGGTCTT
CTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAGATCATGATAGTGTCGGG
AATCGGCTCCGGCTTGTTCTGCCTGGTGCTCAGTGTTTTATCAGTATGCC
AGATTCGATCACCGAAAATGTCGTACGACGTATTCGTTGGTGCCGCTGTT
TCTTGGCTACATCATCTTCACACGGCTCTGATGTGATGCCGGCATTATTA
ATCGGCGGCTCTCCTGCCTAAGATACGCCGGACGGACTGCCGGGCGATGT
TGGCCTCCATTGACGTCGCCCGTTCATCCTCCCGAAAGAGTTCCCGGCTT
GCAGAGCATA
UFO03033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 482..1632 | 8..1150 | 5045 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812780..23813507 | 1033..310 | 3285 | 98.6 | Minus |
| 2R | 25286936 | 2R | 23814322..23814535 | 314..101 | 995 | 97.7 | Minus |
| 2R | 25286936 | 2R | 23814596..23814690 | 102..8 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:17 has no hits.
UFO03033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:17 Download gff for
UFO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RA | 314..1432 | 1..1113 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:17 Download gff for
UFO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 475..1593 | 1..1113 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:59 Download gff for
UFO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 475..1593 | 1..1113 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:59 Download gff for
UFO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23812698..23813505 | 312..1113 | 96 | <- | Minus |
| 2R | 23814325..23814533 | 103..311 | 97 | <- | Minus |
| 2R | 23814596..23814693 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:17 Download gff for
UFO03033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19700221..19701028 | 312..1113 | 96 | <- | Minus |
| arm_2R | 19701848..19702056 | 103..311 | 97 | <- | Minus |
| arm_2R | 19702119..19702216 | 1..102 | 96 | | Minus |
