UFO03034.5prime Sequence
1136 bp (1021 high quality bases) assembled on 2009-01-24
> UFO03034.5prime
CAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGGCCGCCATC
TGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTACATCATGGC
TGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTCGGTGGCCG
CCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTCCGTACCGC
ATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGTGGATCTCT
GCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGACCATTGGGA
TTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCTTCTTTGTG
CCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAATGCGATAAC
TGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTATAACCGCCT
GTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGAACTTCATG
AACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCCACACCGGC
AACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTACGTGGAGC
GGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAG
GCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGACATGATCAG
CACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCATCTGGCTGG
TTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAGTGATGACA
GTGATGTACCTATTCGTGCGCGAGAAATTCCACTGGACTGTGCGGGACTA
CACATTCTTTGAAACGGTCAGCCACCTGGTGCCCATGATTGGCGCACTCA
TTGGTTTCCTTATTCTGCGGAGGTCTTTCGCTGTCGGTGGTGACCCTGGC
ACTGCTTGCGTTCTTTTCGAAGATTCTGATATCTGGCAGGCTTGCAACGA
TGCCCTGGCACAATGTACTTTCGGTGACTTGGGCGTCTTCGCCTCCATCT
CAGCCATGTGCCGCACAATAGTTCGAACATTATGCTCTCGATCTGGCAGA
TTTTCCCCATCAGATGTTTGGCAGACATTCGACACG
UFO03034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 2680 | CG8008-RB | 655..1799 | 8..1131 | 5025 | 96.9 | Plus |
| CG8008-RA | 2748 | CG8008-RA | 723..1867 | 8..1131 | 5025 | 96.9 | Plus |
| CG15553-RC | 1784 | CG15553-RC | 511..668 | 58..215 | 265 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9159533..9160305 | 786..14 | 3835 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9159338..9159473 | 921..786 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 9159107..9159269 | 1072..921 | 280 | 85.3 | Minus |
| 3R | 32079331 | 3R | 31100366..31100486 | 178..58 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:22 has no hits.
UFO03034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:26 Download gff for
UFO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RB | 652..1747 | 4..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:02 Download gff for
UFO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1816 | 4..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:21 Download gff for
UFO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1816 | 4..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:21 Download gff for
UFO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9159336..9159472 | 787..922 | 99 | <- | Minus |
| 2R | 9159533..9160305 | 14..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:02 Download gff for
UFO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5046841..5046977 | 787..922 | 99 | <- | Minus |
| arm_2R | 5047038..5047810 | 14..786 | 99 | | Minus |
