UFO03035.5prime Sequence
1066 bp (959 high quality bases) assembled on 2009-01-24
> UFO03035.5prime
CAGTCGACATGACAGAAGGACATGAAAGCGACTTCTTAGTAACAGTACGC
GCACAGGTAATGACCAGAGACGAGAGCACCGAGGGCTGGCTTCCGCTGGC
CGGGGGTGGCCTGGCCAATGTTTCGATCCGGAAGCGGGCTAGGCTATCCC
CATTGGCATCGGGTCATGACTACATCATCTACGGGCAGAGGATATCCGAT
CAGAGCGTCATCTTGAGCTGTGTGATCAATCGTGATCTGAAGTATTACAA
AGTAATGCCCACATTTCATCATTGGCGCGCAGGGAAGCAGCGGAATGGAC
TCACATTTCAAACGGCCGCCGATGCGCGAGCCTTTGACAAGGGCGTCCTG
CGCGCCTACAACGAGCTGATCGATGGACTGGCCAAATCGAATCCAACGAT
AATATGCCCACCGCTAACCAAATATGATTCGGTTGGCGAAGATGATGTAT
TCATGACCCTGGACTTACCTGTGGAGAGCGAGAGTTTACAAAAGATCCAT
TCAAGCCCCGAGGGCAGCGAGAAAAGTCACAAGAGCGTCAGCAACAACTC
CGACTCGGAGAAGCTGCCTCCGCCGCCCATTCACTACATATCCACGGACA
AAACATCGGCCACCACGTCGCCGCCAGACGCACCGCCCGCTTCTGCTGCT
CCATCGCCGGCGACGGCCGGCCAGATAGCGGCCAGTGAGAACTACTCGTA
CGTGACGCTGACGGCGGTGCACCACGACTACAACTATCCGGTGGTGGACC
AGCCGGTGGGGGCGCAGTGCTCAATGCTCGCAGGAGTCGATCAGTGCACT
AAAGAAGCGCAACGCTCTGGAGGCGGCGCAGCGATGGCGGCGGCTCAGAC
GGCGCGGGTGGTGACTGGCCTGTCGCGACGCGGATCGGGAAAGCCACTGC
ACAGCCGACGTATCCGACTACTGAAGAGAGACGCGCTGCGATGCGCTACT
GCCACGAGCTGTACAGCGAGACTCATCGCGGGCGCTGCTATATGCCGATG
CCTCGCACGCTACGATGCATCTCTGATGCTGTGCGTGCATGATCTACACT
GCATGAACGACGCCAG
UFO03035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spred-RC | 4167 | CG10155-RC | 493..1585 | 8..1064 | 4530 | 96.1 | Plus |
| Spred-RA | 2657 | CG10155-RA | 493..1585 | 8..1064 | 4530 | 96.1 | Plus |
| Spred-RB | 2525 | CG10155-RB | 790..1453 | 437..1064 | 2400 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14762345..14762796 | 970..532 | 1620 | 96.2 | Minus |
| 2R | 25286936 | 2R | 14764058..14764239 | 208..27 | 895 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14763830..14763999 | 376..207 | 835 | 99.4 | Minus |
| 2R | 25286936 | 2R | 14762919..14763075 | 531..375 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:36 has no hits.
UFO03035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:25 Download gff for
UFO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RA | 492..1467 | 8..970 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:19 Download gff for
UFO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RA | 493..1468 | 8..970 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:50 Download gff for
UFO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spred-RA | 493..1468 | 8..970 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:50 Download gff for
UFO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14762345..14762796 | 532..970 | 96 | <- | Minus |
| 2R | 14762919..14763074 | 376..531 | 100 | <- | Minus |
| 2R | 14763831..14763999 | 207..375 | 99 | <- | Minus |
| 2R | 14764060..14764237 | 29..206 | 99 | <- | Minus |
| 2R | 14768004..14768024 | 8..28 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:19 Download gff for
UFO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10651336..10651504 | 207..375 | 99 | <- | Minus |
| arm_2R | 10651565..10651742 | 29..206 | 99 | <- | Minus |
| arm_2R | 10655509..10655529 | 8..28 | 100 | | Minus |
| arm_2R | 10649850..10650301 | 532..970 | 96 | <- | Minus |
| arm_2R | 10650424..10650579 | 376..531 | 100 | <- | Minus |
