Clone UFO03037 Report

Search the DGRC for UFO03037

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:30
Well:37
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG3625-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03037.5prime Sequence

1124 bp (1015 high quality bases) assembled on 2009-02-18

> UFO03037.5prime
CAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGCATCCTAAA
ATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAGGAGGAGGA
GAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGGGCCATATG
CGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCCTGTCTGGC
GAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAGTGCGTGCG
CACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATTGCGCGGGC
GTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGGAGTTTGAC
GAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCCCAGTCGAC
GTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTTAGAACGGG
AGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACTTCAAGCAC
AGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGAGCGGGGTT
GGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTGCGAGGGCA
ACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCCTCAACCTC
TGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCACCAGTATGT
GAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTTCCCAGACG
TCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAGCAGCTGGC
GACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGCGTGGCTAC
GTGCTTCTTCATCGATTGTGCCATAATGTTATTGACTTCATACGCACAAT
TTACAAAATCCTCGTGCCTGGGGGCATTTGGGTGAATCTCCGGGCCGCTG
CTGTACCATTTTAGCGACGTCAGCGGGCAAACAGCATCGAGCCGGCTTTC
GAGGACTTTTCATATATCTTGGAAGCGTAGATTCGTTATCCGAAATCGCC
ACGGGCATCCGTATACAAGTACGCACAGAACCGGCTCTCCAATGAACAGA
CCGAGTACAGAAGTCTTTTCTCTG

UFO03037.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1747 CG11596-RA 104..1220 9..1121 5110 97.9 Plus
CG11596-RE 1765 CG11596-RE 508..1245 388..1121 3215 96.8 Plus
CG11596-RD 1544 CG11596-RD 287..1024 388..1121 3215 96.8 Plus
CG11596-RE 1765 CG11596-RE 104..458 9..389 1495 93.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1928333..1928581 142..390 1245 100 Plus
X 23542271 X 1929454..1929711 650..906 1240 99.6 Plus
X 23542271 X 1929244..1929384 509..649 705 100 Plus
X 23542271 X 1927786..1927920 9..143 675 100 Plus
X 23542271 X 1929050..1929170 388..508 605 100 Plus
X 23542271 X 1929773..1929990 907..1121 405 86.4 Plus
Blast to na_te.dros performed on 2014-11-28 23:24:52 has no hits.

UFO03037.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:14 Download gff for UFO03037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 81..1086 1..1006 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:20 Download gff for UFO03037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 97..1102 1..1006 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:41 Download gff for UFO03037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 97..1102 1..1006 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:41 Download gff for UFO03037.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1929773..1929872 907..1006 97 == Plus
X 1927779..1927919 1..142 97 -> Plus
X 1928334..1928580 143..389 100 -> Plus
X 1929052..1929170 390..508 100 -> Plus
X 1929244..1929384 509..649 100 -> Plus
X 1929454..1929711 650..906 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:20 Download gff for UFO03037.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1821812..1821952 1..142 97 -> Plus
arm_X 1822367..1822613 143..389 100 -> Plus
arm_X 1823085..1823203 390..508 100 -> Plus
arm_X 1823277..1823417 509..649 100 -> Plus
arm_X 1823487..1823744 650..906 99 -> Plus
arm_X 1823806..1823905 907..1006 97 == Plus