UFO03039.5prime Sequence
1129 bp (1015 high quality bases) assembled on 2009-02-18
> UFO03039.5prime
CAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACATCCCCGAC
TCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCATCCGCCACA
GCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAACCTGAACC
AGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCGTTCCCGGC
TCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAACAGCAGTT
GCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGCCCAGCACA
AAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCAACGGCAGC
GGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGCAGTGCCGC
CGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCACGGCAAAT
CTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATGCGGCGCAG
GGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTGCTGCTGGA
CGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCAGTCCGGCT
ACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCTTCGACAGC
ATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTGCCTAATTG
TTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCGACTTCCCC
CAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATAACTATCAG
GCCCAGCAGCCCGATGAACTTTCGCTGACCAAGGCACACGAATCCTCATC
CTGTAGAAGTCCAACGATGGATGGTGGCGTGACAGAGCGGCAATTCCGTC
GCTGGTTCCCAGCACTACACAACGGAGGATTGTGATACGACGCGAGATCA
CACCTACGCATGCCGAGACGTGCTTGATATTGTGTCGCGCTGTACAGCTT
CACGTCACAACGACCAGGAGCTCTCGTCGAGAGCGATCGCTGAAGATCGT
GATCCGCCGCCTCCGATCGACTGTTACAAGCTCCGCACATCAGCAGTCGT
TAGTTCCCGCAATATCTCAAGTGACACTA
UFO03039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dock-RD | 2825 | CG3727-RD | 771..1864 | 9..1079 | 4875 | 97.5 | Plus |
| dock-RC | 3583 | CG3727-RC | 619..1712 | 9..1079 | 4875 | 97.5 | Plus |
| dock-RB | 3618 | CG3727-RB | 654..1747 | 9..1079 | 4875 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 829536..829972 | 9..445 | 2185 | 100 | Plus |
| 2L | 23513712 | 2L | 830735..831030 | 647..937 | 1215 | 98 | Plus |
| 2L | 23513712 | 2L | 830144..830349 | 444..649 | 1030 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 67..290 | 177 | 55.7 | Plus |
UFO03039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:12 Download gff for
UFO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dock-RC | 615..1725 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:17 Download gff for
UFO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dock-RB | 645..1755 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:11 Download gff for
UFO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dock-RB | 645..1755 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:11 Download gff for
UFO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 830738..831083 | 650..983 | 96 | -> | Plus |
| 2L | 829527..829971 | 1..444 | 99 | -> | Plus |
| 2L | 830145..830349 | 445..649 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:17 Download gff for
UFO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 829527..829971 | 1..444 | 99 | -> | Plus |
| arm_2L | 830145..830349 | 445..649 | 100 | -> | Plus |
| arm_2L | 830738..831083 | 650..983 | 96 | -> | Plus |
