UFO03040.5prime Sequence
494 bp (493 high quality bases) assembled on 2009-02-18
> UFO03040.5prime
CAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACATATCGGTCC
AATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACGAATTTACA
CTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTGGTACCAGC
GACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGGGTGCCATG
CTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATCGCCACGAG
CATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATCCACACATT
ATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCAACAAGCAT
GTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATCATGGCGCT
GATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCGCAAGGAAT
ACCAGAGGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATATT
UFO03040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 1473 | CG8121-RB | 320..805 | 8..494 | 2395 | 99.6 | Plus |
CG8121-RC | 1298 | CG8121-RC | 145..630 | 8..494 | 2395 | 99.6 | Plus |
CG8121-RA | 1504 | CG8121-RA | 148..633 | 8..494 | 2395 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9335699..9335839 | 81..221 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9335900..9336029 | 222..351 | 650 | 100 | Plus |
3R | 32079331 | 3R | 9336157..9336253 | 351..447 | 485 | 100 | Plus |
3R | 32079331 | 3R | 9335561..9335635 | 8..82 | 375 | 100 | Plus |
3R | 32079331 | 3R | 9336493..9336529 | 458..494 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 2337..2375 | 491..453 | 105 | 74.4 | Minus |
UFO03040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:10 Download gff for
UFO03040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RB | 313..805 | 1..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:50 Download gff for
UFO03040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 141..633 | 1..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:01 Download gff for
UFO03040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 141..633 | 1..494 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:01 Download gff for
UFO03040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9335554..9335635 | 1..82 | 95 | -> | Plus |
3R | 9335701..9335839 | 83..221 | 100 | -> | Plus |
3R | 9335900..9336029 | 222..351 | 100 | -> | Plus |
3R | 9336158..9336252 | 352..446 | 100 | -> | Plus |
3R | 9336483..9336529 | 447..494 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:50 Download gff for
UFO03040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5161276..5161357 | 1..82 | 95 | -> | Plus |
arm_3R | 5161880..5161974 | 352..446 | 100 | -> | Plus |
arm_3R | 5162205..5162251 | 447..494 | 95 | | Plus |
arm_3R | 5161423..5161561 | 83..221 | 100 | -> | Plus |
arm_3R | 5161622..5161751 | 222..351 | 100 | -> | Plus |