UFO03042.5prime Sequence
1132 bp (999 high quality bases) assembled on 2009-01-24
> UFO03042.5prime
CAGTCGACATGGGAAAGCTGCTGAGCCTGCTGTCACGCGACGACTCCAAT
TGTTGCGCCGCCAAATCCTACGATGTCTTCCTGGATTTCGAGAACGCCGC
GCCCACGGAAACGGAGCGTGCCGTCTACGACGAGGTGGAGCGGGTACTCC
GGGAATCGGAGGTGGTGCTCGACGAGATACAGATCTATCGGGGTGCCGGC
AAGGAAATCCGAGAAGCCATCGCCGATCCATCGCCGGAGGTGACCGCCAA
AGCCTGGGCGGCGGTGCTGCCGTTGGTGAACAAGCTGAAGCGCTGCTACG
AGCATTCCATGGAGCTGGACAAGATTGTGCCCAAGCTGCTGGGCCAGCTG
GTGGGCGGAAAACTGAATCCGACACAGCATCTGGAGACGCAGCAGGCGCT
GGTCAAGCAGCTGGCCGAGATCTTGGAGTTCGTGCTGAAGTTCGATGAGT
ACAAGATGAAAACCCCCGCCATACAGAATGATTTTAGCTACTACAGACGC
ATCGTCAGCCGACAGCGTGTGGATTCCACGGAGAATATGCTGGTCAGCAC
GGAACTGGCCAACCGGATGTCCCTGTTCTACGCCCACGCCACGCCCATGC
TCAAGGTGCTGAGCGAGGCGACCTCAAAGTTTGTCAATGACAATGCCGAT
GATGTCCAGAACACGACGGAAACGCTGGGCACCATGGCCAAGGTGTGCCT
GAGGATGCTGGAAAATCCAAAACTCCTGCAACAGATCGAGCGTGAGGACA
CGAAAATGCTGGTGCTGCGCGTAATGGTCGGCCTGGTGATCCTCTACGAC
CATGTGCATCCCGGAGGGAGCCTTCGTGCGTGGCGCCCATGTGATGTGAA
GGGGTGCGTCCGACTGCTGCAGGCGCAACCGGCCATCAAGGCGGAGCCGC
TGCTGAATGCCCTGCGATACACGACGAAGCATTTGAATGGGGAGAACACG
CCGAAGAATAAAAGCGTTTGTGCCGCAGCAAGCTTTCTAAGACATCGTTG
GCGCGGCGGCCCAGGTAGTGGTCATAATCATAATCATAATCATAATCATA
TCCCAACTAGCTAGAAAATCTGTCAATGAACTGGTGCTGAATTTTACAAT
TAAAACGCCCGGCGCAACGAGGGTTTCGAACA
UFO03042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32066-RB | 2324 | CG32066-RB | 435..1398 | 9..971 | 4735 | 99.6 | Plus |
| CG32066-RC | 2112 | CG32066-RC | 353..1316 | 9..971 | 4735 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10646859..10647127 | 459..191 | 1330 | 99.6 | Minus |
| 3L | 28110227 | 3L | 10641532..10641796 | 718..454 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 10641224..10641465 | 960..719 | 1115 | 99.2 | Minus |
| 3L | 28110227 | 3L | 10659364..10659547 | 192..9 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:11 has no hits.
UFO03042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:09 Download gff for
UFO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RB | 430..1406 | 2..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:34 Download gff for
UFO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RC | 348..1324 | 2..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:46 Download gff for
UFO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RC | 348..1324 | 2..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:46 Download gff for
UFO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10641224..10641465 | 719..960 | 99 | <- | Minus |
| 3L | 10641532..10641794 | 456..718 | 100 | <- | Minus |
| 3L | 10646863..10647126 | 192..455 | 100 | <- | Minus |
| 3L | 10659365..10659552 | 2..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:34 Download gff for
UFO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10634324..10634565 | 719..960 | 99 | <- | Minus |
| arm_3L | 10634632..10634894 | 456..718 | 100 | <- | Minus |
| arm_3L | 10639963..10640226 | 192..455 | 100 | <- | Minus |
| arm_3L | 10652465..10652652 | 2..191 | 97 | | Minus |
