UFO03043.5prime Sequence
1119 bp (1008 high quality bases) assembled on 2009-02-18
> UFO03043.5prime
CAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGTGGGCGGTC
TCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGGCGGGAAAT
GGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCATCGAGCGGG
GCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGGTTGCCGGC
CACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTGCCGGCCTC
GTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCCAGCCTTGA
AGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCGAACCGGAA
TTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGCCTGTGGGT
GCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGATCTATGGAG
CAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGTTGAGACGA
CACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTGGCCAATCT
GGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGCAGCCGATT
TGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGGAATCGTGG
CGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGTAACTTCAG
CATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGGACTGGCTC
TATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCCATCCCCTC
TGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGTAACAGACC
CTGGCCACTTCGCCGATGATTATCGAGAATTCAAGTGCTGGGCTCAGAGA
CCGAACACCCAGGCTGGAGCCGAGTTCTTGGATCCGGATACCGGGAGTCT
ATTCTACGCCCTGCCCAATCTGAACGAAGTCGCCTGCTGGCGCACTGCCA
CAGACTTTAGTTCACAGTCCCGGCGCATCCCATGACAATGATACCCTTGG
TGTTCCAGTGACATCAGGTGATAGATCCAACGTCTATTGGGTCTATCCAA
TCAGCTACCGGTCTCACTT
UFO03043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-b-RB | 1839 | CG17914-RB | 257..1379 | 6..1114 | 5035 | 97.6 | Plus |
| yellow-b-RA | 1659 | CG17914-RA | 77..1199 | 6..1114 | 5035 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16756968..16757711 | 273..1011 | 3410 | 98.8 | Plus |
| 2L | 23513712 | 2L | 16755696..16755963 | 6..273 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:14 has no hits.
UFO03043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:08 Download gff for
UFO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-b-RA | 72..1203 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:04 Download gff for
UFO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-b-RA | 72..1203 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:56 Download gff for
UFO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-b-RA | 72..1203 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:56 Download gff for
UFO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16755691..16755963 | 1..273 | 98 | -> | Plus |
| 2L | 16756969..16757827 | 274..1119 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:04 Download gff for
UFO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16755691..16755963 | 1..273 | 98 | -> | Plus |
| arm_2L | 16756969..16757827 | 274..1119 | 96 | | Plus |
