UFO03046.5prime Sequence
1146 bp (1016 high quality bases) assembled on 2009-02-18
> UFO03046.5prime
CAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGCTGCAAATC
CACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTGGTGGCCGT
CTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATACCGCCATGC
ATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCCAGGCCATG
ATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCGCACCGAAA
CAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTCCATGGTGC
TGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACTTTAACACC
TGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCGGCCAGCAT
TGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCTGAAAGTAA
TGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGATTGGTCACC
TTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCGAAATTCTT
TACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCTGATTACCG
GCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGCTTCTAACT
AAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCTGGCACCT
CATCGCAGTACTGTTGTAATCATTAAGCCATTCTCGCCGACATGGAAGCC
ATCACAAACGGCATGATAGAACCTGGATCGCCAGCGCATCACACCTTGTC
GCCCTTGCGTTAAATTTTGGCCTGGTGAAACGGGGGGCAAGAAGTGTCAT
ATTTGCCACGTTAAATCAACTGGGGTAAAACTACCCAGGGTATTGG
UFO03046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10165-RD | 1440 | CG10165-RD | 658..1341 | 9..692 | 3420 | 100 | Plus |
| CG10165-RC | 1308 | CG10165-RC | 155..838 | 9..692 | 3420 | 100 | Plus |
| CG10165-RE | 854 | CG10165-RE | 72..755 | 9..692 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19527380..19527706 | 692..366 | 1635 | 100 | Minus |
| 2L | 23513712 | 2L | 19527760..19527953 | 367..174 | 970 | 100 | Minus |
| 2L | 23513712 | 2L | 19528088..19528252 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:39 has no hits.
UFO03046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:16 Download gff for
UFO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10165-RB | 524..1215 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:12 Download gff for
UFO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10165-RB | 552..1243 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:10 Download gff for
UFO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10165-RE | 64..755 | 1..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:10 Download gff for
UFO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19528088..19528260 | 1..173 | 97 | | Minus |
| 2L | 19527380..19527705 | 367..692 | 100 | <- | Minus |
| 2L | 19527761..19527953 | 174..366 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:12 Download gff for
UFO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19528088..19528260 | 1..173 | 97 | | Minus |
| arm_2L | 19527380..19527705 | 367..692 | 100 | <- | Minus |
| arm_2L | 19527761..19527953 | 174..366 | 100 | <- | Minus |
