UFO03047.5prime Sequence
1119 bp (969 high quality bases) assembled on 2009-01-24
> UFO03047.5prime
CAGTCGACATGAGCCTTCAAAATGTCTGCCGCAAGGGTAACGCCTTCAAC
CTGTTGAATGTCGCCAGGAAAGTTCAATGCCGCGCTCTATCGGCCGCTGT
GGCGAATCCACAACCGAAGCAGAAGAACAGCCAGAATATCGTGCTCGTGG
ATGGAGTCCGCACACCCTTTCTGACCTCCGGAACCACCTACTCCAAGCTG
ATGCCCCATGAACTGGCCAGGCACTCGCTTTTGTCATTGCTGCAAAAGAA
CCGCCTGGACAAGGAGCTCATCGACTACATCGTGTACGGCAGCGTCATCC
AGGAGGTGAAGACCTCCAACATTGCCAGGGAGGCAGCCTTGGCAGCTGGA
TTCAGCAACAAGACACCTGCCCACACCGTCACCATGGCCTGCATCAGTTC
CAATGCGGCCATCACCACGGGCATGGGTCTGATAGCCACCAACACCTACG
ATGTCATCGTTGCCGGCGGCGTGGAGTTCATGTCCGATGTGCCCATTCGC
CACTCCCGCAAGATGCGCTCCCTGCTCCTGAAAGCCAACAAGGCAAAGAC
CCTGGGCCAGCGGCTGGCCCTGCTGTCCACCTTCAGGCCAGACTTCCTGG
CCCCCGAGCTGCCCGCCGTTGCGGAGTTCTCCTCCGGCGAGACCATGGGA
CACTCGGCCGATCGCTTGGCATCCGCCTTCAACGTATCCCGGAGCGAGCA
GGACGAGTACGCCCTGCGATCCCACACACTGGCCCAAGGAGGCCCAGGAG
AAGGGCTACTTCACCGATCTGGTTCCCTTCAAGGTGTCCGGCGTGACCAG
ATCGTGGACAAGGACAACGGCATCCGCGTGTCTAGTCCCGAGAGCCTGGC
AAGCTGAGCCCGCCTTTGTGAAGCCTACGCACTGTGAACAGCAGCAACGC
CTCCTTCCTCACGGACGAGCTTCTGCTGCATTATCATGACCGAGAGAAGC
CAAGCAGCTGGGCCTCAGCCAGCTATCTGCCGACTTCCTGTTCGTGTTCG
CAGATCCGTCAACAGCTGCTGCTGGGAACCCGCTACGATCCCAGCCTGCT
CAAGAAGCTGACTCACGCTGAAGGACATGGAACTCAGGGGAAAATTCACA
AGGCGTTTCGCCGGCACAG
UFO03047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thiolase-RA | 1593 | CG4581-RA | 79..1202 | 9..1114 | 4765 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23867196..23867764 | 967..407 | 2255 | 97.9 | Minus |
| 2R | 25286936 | 2R | 23867819..23867994 | 408..233 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 23868051..23868214 | 234..71 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 23868462..23868525 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:32 has no hits.
UFO03047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:15 Download gff for
UFO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 86..1194 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:06 Download gff for
UFO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 73..1181 | 1..1091 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:05 Download gff for
UFO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 73..1181 | 1..1091 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:05 Download gff for
UFO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23868053..23868212 | 73..232 | 100 | <- | Minus |
| 2R | 23868462..23868531 | 1..72 | 94 | | Minus |
| 2R | 23867060..23867763 | 408..1091 | 95 | <- | Minus |
| 2R | 23867820..23867994 | 233..407 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:06 Download gff for
UFO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19754583..19755286 | 408..1091 | 95 | <- | Minus |
| arm_2R | 19755343..19755517 | 233..407 | 100 | <- | Minus |
| arm_2R | 19755576..19755735 | 73..232 | 100 | <- | Minus |
| arm_2R | 19755985..19756054 | 1..72 | 94 | | Minus |
