UFO03048.5prime Sequence
1098 bp (1035 high quality bases) assembled on 2009-02-18
> UFO03048.5prime
CAGTCGACATGGTGCAGATCTGCGTGCTGTGCCTCAGCGGCGAGCGGGAC
GAGCTGATCTTCGGCACTGTGCACGTGGAGGGCAACATGATGGTGCACCG
CAACTGCTTGTACCTCAGCTCGAATCTCATCCAGCGTGGCGAAAAGAAAT
TGAGCATCATGAACTTCCTCAAGGAGGACATCGAAGCGGAGGTCAACCGC
TGCCGTTTGCTTAAGTGTTGCTATTGCCGCCGCTTGGGCGCCAATATTTG
GTGCTGCAAGTCGGGGTGCCGTCGCACCTTCCATACCAAGTGCGGCGTCG
ATAATCTGGCCCAGAACCAGTTCTGCGACACGTACAACTCGTTCTGCCAT
CAGCATGTGCTGGTGCCTCGAAACCGTCCGGTGTTCAAGAATGACGAGGA
ATGTCTCCTATGCGCGGAGGACGTGGTTGCCAAGGGCGAGCGCTTCAGCG
TGGTGACCTGCCTATACGCGCCGTGCTGCCGCAATGGATGGTTCCACCGC
AGGTGCCTGCAGCGCTACGCCAACTCGTCCGGCTACTTCTTCAAGTGCCC
GCTGTGCAACAACACAGATGTGTTCCGCAGGGTGGCTTATATGGGCATCG
CGGTGCTGGACCAAGACGCTTCCTGGGAGACCGAGCCGGACGCCTTTGCT
GGGCAGTACCGCCGCGATGTCAATTGTACGGCCGCGTTGTGCGTTGCGGT
CTCTGGTCGCGCCGACACTTCCGCCATGCTGCTGTACTGCACCTCATGTG
GCGCCAATCCGTCACATTACCTTTGCACGTTGAAGACTCTCCAAAACTAC
GTCTGCAAGGTTTGCTCAGCCGTCAGCCCGGAGGCAGTGCCCGTTGCCGA
ATCGGACTCGGATGACGCCGGCTCAATGGACGACTCGGCCGAAGCCCCAC
GTCCAGGTCACCTAAATGGTGATCAGATTCAGGAGAGCTATCACCCTCCC
ATTGGGATGATTTCGGCTCCTCCGACGATGATGCCGTCTTTCAGCGTGCG
TTCGATACAAAGTGCAGAGTCGCGTGGGTGACCCTCTCTCGAGATTCAAC
CATCTTCACTTCTGCGGGGGGCAAGCCGCTTTTAACGCATCTGGGGAA
UFO03048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 379..1439 | 8..1070 | 5125 | 99.2 | Plus |
| Phf7-RB | 2211 | CG9576-RB | 374..1434 | 8..1070 | 5125 | 99.2 | Plus |
| Phf7-RA | 2221 | CG9576-RA | 95..1155 | 8..1070 | 5125 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20161940..20162443 | 613..110 | 2520 | 100 | Minus |
| X | 23542271 | X | 20161450..20161875 | 1038..614 | 1970 | 99.1 | Minus |
| X | 23542271 | X | 20162535..20162637 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:11:48 has no hits.
UFO03048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:14 Download gff for
UFO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 90..1164 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:42 Download gff for
UFO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..1165 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:54 Download gff for
UFO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..1165 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:54 Download gff for
UFO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20161411..20161875 | 614..1082 | 97 | <- | Minus |
| X | 20161940..20162442 | 111..613 | 100 | <- | Minus |
| X | 20162535..20162641 | 1..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:42 Download gff for
UFO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20055444..20055908 | 614..1082 | 97 | <- | Minus |
| arm_X | 20055973..20056475 | 111..613 | 100 | <- | Minus |
| arm_X | 20056568..20056674 | 1..110 | 97 | | Minus |
