UFO03049.5prime Sequence
1137 bp (905 high quality bases) assembled on 2009-02-18
> UFO03049.5prime
CAGTCCCCTGCCCGTGCTGCCGATGCCACCACTCATGCAGAACGCCGTGG
AGCCGATGCAAGTGGCCCTCGCGCCGCCGAACGAGGACAACGAAAACAAC
GAGGAGCAGCAGATTGTGGTGGAGAACCCCAGCATCGATCTCGAAGTGTA
CGCCAACCAATATGCCGGGATCGTGCGGCTCCATCGCCTAATTTATGTGG
CGGACGTCTGCCCGGTTTTAGCCGTGGAGGCTCTGAAAATGGCCATTACT
TACGTTCAAACCACCTACAACGTAAATCTCTACCAAGTGCTGCACAAGCG
CTTGAGTGATCTAAACGCTGGAAATGCGCCTGCGCCACCAGCAAATGCTG
GCGGAGATCAGGCAGGAGCAGCGGCTCCCGGTCCCCTGGCAGCTGCTCCC
CTTCCGGATATCGCGGCACAACCTGTGGCTCAGGCTCAAGGACAGGCTCA
ACCCGCTGTCGAAAAGGATGCCTTCGCCTACGATGCCGCTTGGGTAGACA
CCAAGATGAAGAAGGCGGCTCTTAAGCTGGAGAAACTGGACTCAGACCTC
AAGAACTACAAGTCCAATTCGATCAAGGAGAGCATCCGGAGGGGCCACGA
TGACCTGGCTGACCACTACCTCAGTTGTGGCGACCTCACCAATGCCCTGA
AGTGCTATTCTCGGGCCAGAGACTACTGCACTAGTGGCAAGCATGTGGTA
AACATGTGCCTTAACGTGATCAAGGTGTCAATTTATCTCCAGAATTGGGC
CCATGTGATGAGCTACATATCCAAGGCGGAAAGCACCCCGGACTTCGCCG
AGGGCTCCAAGGAGGCTAATGCCCAGGTTCATACTCGCCTTGAATGCGCT
GCTGGTCTGGCGGAACTGCAGCAAAAGAAATATAAAGTGGCCGCTAAGCA
TTTCCTCAATGCTAACGTCGATCACTGCGACTTTCCCGAAATGATCCTCC
ACCAGCAATGTGGCGGTCTATGGGTGGCCTCCTGCCGCCCTGGCCACCAT
TTGATCCAACAGAACTTAGCGTCTGGTCATCCCCTCTACATCCTTAATTG
GTCTCTTGACCTGGGACCCCCACTCCAGGAATTATTTTCCAGGTCCTCAC
AAGAGTAAATCGCCCTCCAGTGTCCGGAACCTCTCGG
UFO03049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1b-RA | 1802 | CG3889-RA | 138..1216 | 9..1089 | 4915 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18903689..18904691 | 1045..39 | 4595 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:05 has no hits.
UFO03049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:05 Download gff for
UFO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 225..1269 | 9..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:18 Download gff for
UFO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 138..1182 | 9..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:06 Download gff for
UFO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1b-RA | 138..1182 | 9..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:06 Download gff for
UFO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18903677..18904689 | 41..1057 | 98 | <- | Minus |
| 3L | 18904762..18904793 | 9..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:18 Download gff for
UFO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18896777..18897789 | 41..1057 | 98 | <- | Minus |
| arm_3L | 18897862..18897893 | 9..40 | 100 | | Minus |
