UFO03051.5prime Sequence
1154 bp (1056 high quality bases) assembled on 2009-02-18
> UFO03051.5prime
CAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGCTGCTCTCC
ATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCACAGCAGGA
GGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTACCGGGATG
AGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGAAGAAGGTG
GCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATCCAAGAGAG
TGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATCCACCGTGA
TGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGTCCGATGAT
GTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGGGCGAATGTTATCTC
CATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGCCCCTAGCG
ATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGTTCATTCAG
ATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCGCACCGCTC
CCTGACCGCCCGCTCCATGGGCAAGCGGGACTCGGTGAGCGACGCCGTCG
TCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATCGCACCTCG
GAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACGGAGTGCGT
CCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATCTTATGCCA
CCAGCTATGTCCTACGCCGCACCAGTGGCAGCAACTTCGAGGAGCTGTAC
GACGCCGGACGTAGAGGTCGCTCCGGATTCGACTGTCGCCAGATCTATCT
GGAGTGCAACGAGGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCGGCGGCAACCGAGCGTTCTGACAATCCAGATGGAGTTCTGAGTC
ATTACTGGATTTATCACAAGGAGTTCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGGCCACTCTATCCGAGTAACTGGTTGTAATCTATAAGCAAT
CTGC
UFO03051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4702-RC | 1305 | CG4702-RC | 259..1124 | 1..866 | 4285 | 99.7 | Plus |
| CG4702-RA | 1375 | CG4702-RA | 329..1194 | 1..866 | 4285 | 99.7 | Plus |
| CG4702-RD | 1398 | CG4702-RD | 268..758 | 1..491 | 2425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12123461..12123867 | 407..1 | 2005 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12122171..12122424 | 742..489 | 1270 | 100 | Minus |
| 3R | 32079331 | 3R | 12121764..12121887 | 866..743 | 605 | 99.2 | Minus |
| 3R | 32079331 | 3R | 12123293..12123379 | 491..405 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:05 has no hits.
UFO03051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:05 Download gff for
UFO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4702-RA | 325..1197 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:31 Download gff for
UFO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4702-RA | 329..1201 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:42 Download gff for
UFO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4702-RA | 329..1201 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:42 Download gff for
UFO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12121757..12121887 | 743..874 | 96 | <- | Minus |
| 3R | 12122171..12122421 | 492..742 | 100 | <- | Minus |
| 3R | 12123293..12123378 | 406..491 | 100 | <- | Minus |
| 3R | 12123463..12123867 | 1..405 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:31 Download gff for
UFO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7947479..7947609 | 743..874 | 96 | <- | Minus |
| arm_3R | 7947893..7948143 | 492..742 | 100 | <- | Minus |
| arm_3R | 7949015..7949100 | 406..491 | 100 | <- | Minus |
| arm_3R | 7949185..7949589 | 1..405 | 99 | | Minus |
