UFO03054.5prime Sequence
1080 bp (958 high quality bases) assembled on 2009-01-24
> UFO03054.5prime
CAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATGTGTACTTC
GCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTCTACATATC
CATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGCCAAGGCGC
AGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACTACAGCAAC
AGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATATACTCGGC
GTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCATGGATGACG
AGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGCCGGAGCGT
CTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGACTTCTCCAG
CCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGTGCACAACA
ACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCTCCCGCCGC
TCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCGTCCAATCG
ACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCCCCGCAACA
TGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGTGTGTGGGT
CCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAGTTCGTGGA
GATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTACGTAGAGG
CCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGATTGGCCTG
GCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGATGTCCACTA
CGCCGGAATCGTGGCGCAGTTCACGACTGTGTGTACCGTGCCAATGTGGT
GACACTTTCGATACGCGGCAGTGTGACCTGGACGAGGTGTGATGCGCTGA
GCACACACTGCGACTACTGCGCAGTGCGACGAGGCCGCACGCGGGCTCGT
CTCGCACGTATTCTCACGGCGAGAAGTACGAACCTCACGCCCAGCCAGTC
TCACGGACTGCTCTACCCAGTCGAGTCGGC
UFO03054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12910-RC | 2487 | CG12910-RC | 847..1951 | 6..1074 | 4660 | 96.7 | Plus |
CG12910-RA | 1702 | CG12910-RA | 62..1166 | 6..1074 | 4660 | 96.7 | Plus |
CG12910-RB | 1705 | CG12910-RB | 176..1169 | 117..1074 | 4105 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10268143..10268503 | 584..939 | 1580 | 97.8 | Plus |
2R | 25286936 | 2R | 10267734..10268042 | 278..586 | 1545 | 100 | Plus |
2R | 25286936 | 2R | 10267100..10267264 | 117..281 | 825 | 100 | Plus |
2R | 25286936 | 2R | 10266917..10267027 | 6..116 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 582..665 | 755..667 | 109 | 61.8 | Minus |
UFO03054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:03 Download gff for
UFO03054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 46..1069 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:11 Download gff for
UFO03054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 59..1082 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:40 Download gff for
UFO03054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12910-RA | 59..1082 | 1..1006 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:40 Download gff for
UFO03054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10266914..10267027 | 1..116 | 97 | -> | Plus |
2R | 10267100..10267262 | 117..279 | 100 | -> | Plus |
2R | 10267736..10268042 | 280..586 | 100 | -> | Plus |
2R | 10268146..10268585 | 587..1006 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:11 Download gff for
UFO03054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6154419..6154532 | 1..116 | 97 | -> | Plus |
arm_2R | 6154605..6154767 | 117..279 | 100 | -> | Plus |
arm_2R | 6155241..6155547 | 280..586 | 100 | -> | Plus |
arm_2R | 6155651..6156090 | 587..1006 | 95 | | Plus |