Clone UFO03054 Report

Search the DGRC for UFO03054

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:30
Well:54
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG12910-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03054.5prime Sequence

1080 bp (958 high quality bases) assembled on 2009-01-24

> UFO03054.5prime
CAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATGTGTACTTC
GCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTCTACATATC
CATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGCCAAGGCGC
AGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACTACAGCAAC
AGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATATACTCGGC
GTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCATGGATGACG
AGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGCCGGAGCGT
CTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGACTTCTCCAG
CCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGTGCACAACA
ACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCTCCCGCCGC
TCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCGTCCAATCG
ACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCCCCGCAACA
TGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGTGTGTGGGT
CCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAGTTCGTGGA
GATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTACGTAGAGG
CCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGATTGGCCTG
GCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGATGTCCACTA
CGCCGGAATCGTGGCGCAGTTCACGACTGTGTGTACCGTGCCAATGTGGT
GACACTTTCGATACGCGGCAGTGTGACCTGGACGAGGTGTGATGCGCTGA
GCACACACTGCGACTACTGCGCAGTGCGACGAGGCCGCACGCGGGCTCGT
CTCGCACGTATTCTCACGGCGAGAAGTACGAACCTCACGCCCAGCCAGTC
TCACGGACTGCTCTACCCAGTCGAGTCGGC

UFO03054.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 2487 CG12910-RC 847..1951 6..1074 4660 96.7 Plus
CG12910-RA 1702 CG12910-RA 62..1166 6..1074 4660 96.7 Plus
CG12910-RB 1705 CG12910-RB 176..1169 117..1074 4105 96.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10268143..10268503 584..939 1580 97.8 Plus
2R 25286936 2R 10267734..10268042 278..586 1545 100 Plus
2R 25286936 2R 10267100..10267264 117..281 825 100 Plus
2R 25286936 2R 10266917..10267027 6..116 555 100 Plus
Blast to na_te.dros performed 2014-11-28 20:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 582..665 755..667 109 61.8 Minus

UFO03054.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:03 Download gff for UFO03054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 46..1069 1..1006 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:11 Download gff for UFO03054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 59..1082 1..1006 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:40 Download gff for UFO03054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 59..1082 1..1006 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:40 Download gff for UFO03054.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10266914..10267027 1..116 97 -> Plus
2R 10267100..10267262 117..279 100 -> Plus
2R 10267736..10268042 280..586 100 -> Plus
2R 10268146..10268585 587..1006 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:11 Download gff for UFO03054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6154419..6154532 1..116 97 -> Plus
arm_2R 6154605..6154767 117..279 100 -> Plus
arm_2R 6155241..6155547 280..586 100 -> Plus
arm_2R 6155651..6156090 587..1006 95   Plus