UFO03055.5prime Sequence
908 bp (902 high quality bases) assembled on 2009-02-18
> UFO03055.5prime
CAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGCTGAAGGAT
GCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGCACCGAAGG
CGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGCCGGCGGAG
GAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCTTTGGCGCC
CCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACACCCATGTC
GCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCACGGACAGCG
GGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACAGTCTCAAG
AACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATGCTGGAGAA
GTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGCCCAGATAG
AGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGAGGCTAACG
CGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAGCACGCCCT
GGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCTGCAGAAAG
AGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGAACGGCGAG
CTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAACACACTGTG
CAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTACGAAACGG
CCAGAATCGAATTCGATGCCTACCGCATGGATTTGGGAGAACACCAAGCC
GGAGCTGACGCCCTCGGCCGTCGCTCTTGAAGAAGACCCAGCGCAGCTAT
GCGCACACAAGGAGCAATATAAAAGCTGCCCCTCGGACGTGGCCGTCAAA
ATGTATGT
UFO03055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arfip-RA | 2004 | CG17184-RA | 284..1177 | 9..903 | 4315 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11233922..11234447 | 754..229 | 2630 | 100 | Minus |
| 3R | 32079331 | 3R | 11234508..11234730 | 231..9 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 11233423..11233572 | 903..753 | 475 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:56 has no hits.
UFO03055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:02 Download gff for
UFO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17184-RA | 292..1196 | 1..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:13 Download gff for
UFO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arfip-RA | 277..1181 | 1..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:08 Download gff for
UFO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arfip-RA | 277..1181 | 1..908 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:08 Download gff for
UFO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11233417..11233570 | 755..908 | 92 | <- | Minus |
| 3R | 11233922..11234444 | 232..754 | 100 | <- | Minus |
| 3R | 11234508..11234737 | 1..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:13 Download gff for
UFO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7059139..7059292 | 755..908 | 92 | <- | Minus |
| arm_3R | 7059644..7060166 | 232..754 | 100 | <- | Minus |
| arm_3R | 7060230..7060459 | 1..231 | 98 | | Minus |
