UFO03057.5prime Sequence
534 bp (534 high quality bases) assembled on 2009-02-18
> UFO03057.5prime
CAGTCGACATGGCCAGTTTCCAGATCCACCAAGACATGAGCAACAAGGAG
AATCCGGGCATTAAGATTCCGGCCGGAGTGAAGAACACCAAGCAGCCGCT
GGCCGTAATTGGGGGAAAAGCGGAGAAAAATGCGCTTGCGCCGCGGGCCA
ATTTCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCGGCCGGGAAA
GTTCAGGTCTTCCGTGACGTCAGAAATCTTAATGTTGATGAGAATGTGGA
GTACGGCGCCAAGAAATCGAATGTGGTGCCCGTGGTGGAGCAATTCAAGA
CCTTCTCCGTGTATGAGGACAACAACGATACCCAGGTTGCGCCATCCGGC
AAATCCCTGGCCTCCCTAGTCGACAAAGAGAACCATGACGTGAAATTCGG
TGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAACACCCATGT
CCGTGACGGATGTTCAGTCCCCCATGTCCGTGGACCGCTCCATTCTCGGT
GTCATACAGTCCAGTGATATCAGCGTGGGCACTG
UFO03057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycA-RA | 2555 | CG5940-RA | 510..1036 | 8..534 | 2635 | 100 | Plus |
| CycA-RC | 2916 | CG5940-RC | 510..1033 | 8..534 | 2580 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11832874..11833069 | 203..8 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 11832053..11832246 | 397..204 | 970 | 100 | Minus |
| 3L | 28110227 | 3L | 11831846..11831982 | 534..398 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:11 has no hits.
UFO03057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:00 Download gff for
UFO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycA-RA | 501..1035 | 1..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:14 Download gff for
UFO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycA-RA | 502..1036 | 1..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:57 Download gff for
UFO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycA-RA | 502..1036 | 1..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:57 Download gff for
UFO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11831846..11831982 | 398..534 | 100 | <- | Minus |
| 3L | 11832053..11832246 | 204..397 | 100 | <- | Minus |
| 3L | 11832874..11833072 | 1..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:14 Download gff for
UFO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11824946..11825082 | 398..534 | 100 | <- | Minus |
| arm_3L | 11825153..11825346 | 204..397 | 100 | <- | Minus |
| arm_3L | 11825974..11826172 | 1..203 | 98 | | Minus |
