UFO03060.5prime Sequence
1073 bp (897 high quality bases) assembled on 2009-02-18
> UFO03060.5prime
CAATCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAACCAAAACTG
TCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAGGATTGTGA
CGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGTGGACGCAG
CGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGCATGGACCC
AACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAATTTCGATGA
TGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGGATACCGCA
CCTTTCTACCTTCCACAAAAATGTGCCTGCAAAGCATTTTCTGGTGGACC
AATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATCCTGTTCAT
TGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGCCTCCCTGA
GCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTCTGTGCATG
CTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAGGAGCACTA
CGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTCGCTGGTGG
CCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACACCTTCCTG
CGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTGGCCATTGC
CGTGCAAATACACCGTTTGAATGTGTCCATGAACGGCAAGGTGGCGGTGC
TGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACTGGGCGGTG
GCCATGCGCGGTCTGGACACGAGCTAACACGCTGATGATGCCCCGCATCG
TGCTCATGTACTTGCTCTGCCTCGTCGCGTCGTTTTCTATGCGGCCAAGA
TTCCAGATCGCTGGTCACGGCAAGTGGACTTCGTTGGGCATTCGCCCAGT
GAAGGCACCTGATCATCGTGGCCGCCTTCTATCACTGGCACACACGGACT
GGTCTATGCCCAGATATCGCCTCGAATACCGGATGCACTGCACAGTTGTC
TCCGCAAGCCTTCTGAGACATAT
UFO03060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7530-RC | 1704 | CG7530-RC | 249..1302 | 8..1053 | 4695 | 97.1 | Plus |
| CG7530-RB | 1574 | CG7530-RB | 119..1172 | 8..1053 | 4695 | 97.1 | Plus |
| CG7530-RA | 2349 | CG7530-RA | 894..1947 | 8..1053 | 4695 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14725473..14725931 | 817..359 | 2250 | 99.3 | Minus |
| 3R | 32079331 | 3R | 14727189..14727328 | 252..113 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 14726040..14726147 | 359..252 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 14730511..14730616 | 113..8 | 515 | 99.1 | Minus |
| 3R | 32079331 | 3R | 14725173..14725390 | 1043..831 | 510 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:45 has no hits.
UFO03060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:07 Download gff for
UFO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RC | 241..1302 | 1..1053 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:50 Download gff for
UFO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RA | 886..1947 | 1..1053 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:21 Download gff for
UFO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RA | 886..1947 | 1..1053 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:21 Download gff for
UFO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14725457..14725930 | 360..831 | 98 | <- | Minus |
| 3R | 14726040..14726147 | 252..359 | 99 | <- | Minus |
| 3R | 14727190..14727327 | 114..251 | 100 | <- | Minus |
| 3R | 14730511..14730622 | 1..113 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:50 Download gff for
UFO03060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10551179..10551652 | 360..831 | 98 | <- | Minus |
| arm_3R | 10551762..10551869 | 252..359 | 99 | <- | Minus |
| arm_3R | 10552912..10553049 | 114..251 | 100 | <- | Minus |
| arm_3R | 10556233..10556344 | 1..113 | 95 | | Minus |
