UFO03061.5prime Sequence
1131 bp (959 high quality bases) assembled on 2009-02-18
> UFO03061.5prime
CAGTCGACATGGAAAAACCTACGACTATCTGTTCAAACTGCTCCTGATCG
GTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTCTCTGAGGAC
GCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTTTAAAATTAG
AACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATATGGGACACTG
CCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTACAGAGGTGCC
ATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTCCTTCGAGAA
CATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCGCCGATGTCG
AGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAGCGACAGGTT
TCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCATCAAGTTCAT
GGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCTTCCTCACCC
TAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAGGCGAACAAC
CCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCGGACGAAGGA
CAGTTGGTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCGCAGTACTGTGTA
ATTCCTTAAGCATTCTGCCGAAATGGAAAGCCATCACAAACGGCATGATG
AACCTGAATCGCAGCGGCATCAGCCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGTTGAAACGGGGCAAGAAGTTGTCCATATTTGGCCAATTTAAT
CAAACTGGTGAACCTCACCCAAGGATGGCTGAAAACGAAAACATATTTTT
CTCAATTAAGCGTTTAGAATGGCAGTTTTCA
UFO03061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab8-RC | 2043 | CG8287-RC | 581..1195 | 14..628 | 3075 | 100 | Plus |
| Rab8-RA | 2263 | CG8287-RA | 581..1195 | 14..628 | 3075 | 100 | Plus |
| Rab8-RB | 1068 | CG8287-RB | 50..548 | 130..628 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19869101..19869308 | 399..192 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 19868723..19868866 | 539..396 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 19870379..19870498 | 133..14 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 19868556..19868646 | 628..538 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 19869367..19869430 | 193..130 | 320 | 100 | Minus |
| X | 23542271 | X | 20252275..20252409 | 169..303 | 315 | 82.2 | Plus |
| X | 23542271 | X | 20251640..20251759 | 14..133 | 225 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:38 has no hits.
UFO03061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:56 Download gff for
UFO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab8-RA | 554..1174 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:47 Download gff for
UFO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab8-RA | 575..1195 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:17 Download gff for
UFO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab8-RA | 575..1195 | 9..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:17 Download gff for
UFO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19869103..19869307 | 193..397 | 100 | <- | Minus |
| 3L | 19869368..19869428 | 132..192 | 100 | <- | Minus |
| 3L | 19870381..19870504 | 9..131 | 98 | | Minus |
| 3L | 19868724..19868864 | 398..538 | 100 | <- | Minus |
| 3L | 19868556..19868645 | 539..628 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:47 Download gff for
UFO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19863481..19863604 | 9..131 | 98 | | Minus |
| arm_3L | 19862203..19862407 | 193..397 | 100 | <- | Minus |
| arm_3L | 19862468..19862528 | 132..192 | 100 | <- | Minus |
| arm_3L | 19861656..19861745 | 539..628 | 100 | <- | Minus |
| arm_3L | 19861824..19861964 | 398..538 | 100 | <- | Minus |
