UFO03065.5prime Sequence
1088 bp (980 high quality bases) assembled on 2009-01-24
> UFO03065.5prime
CAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACATGGAAAAT
TTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCACGTCTCTGT
TGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGAGCACCCTT
CCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGGGAATCGGA
ATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCCATCGCTTT
GGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGACCCCGTGCG
CCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAACGGCTAAGT
CTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTGGAGGATTC
ACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCTGGCGCAGG
CTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAAACTCGCCC
AGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAACAACCAGAT
TGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAGGTTGGCGC
AAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAACCCGAATA
GTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATGAGTGCCCA
CATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGAAATACTAC
TTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCATGGCTACC
GTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTGTGGACATG
CTAGATTTGGGTTTGCGGACAATAGACCAGTGCCCTCGAGCAAATTGTAC
GGCGGGGAGTCTTGTATACGTCTGCCCAGACTAGTGTAGTACATCGCAGC
TTTCTAGACATCGTTGCGCGCGGGCCCAGTAGTGTTCATATCATATCATA
TCATATCATATCCAACTAGCTAGGAGATCTGTCATGACTATGCTGGAATC
TCACAAAACGCCGGCGCAACGAAGTCGACATTCGATGA
UFO03065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 69..1001 | 9..935 | 4500 | 99.2 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 69..1001 | 9..935 | 4500 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336496..4337345 | 911..65 | 4085 | 99.5 | Minus |
| 3R | 32079331 | 3R | 4337548..4337606 | 67..9 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:02 has no hits.
UFO03065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:55 Download gff for
UFO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RC | 75..1025 | 3..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:57 Download gff for
UFO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 75..1018 | 3..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:40 Download gff for
UFO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 63..1006 | 3..943 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:40 Download gff for
UFO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336457..4337342 | 68..945 | 98 | <- | Minus |
| 3R | 4337548..4337612 | 3..67 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:57 Download gff for
UFO03065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162179..163064 | 68..945 | 98 | <- | Minus |
| arm_3R | 163270..163334 | 3..67 | 95 | | Minus |
