UFO03066.5prime Sequence
1098 bp (983 high quality bases) assembled on 2009-01-24
> UFO03066.5prime
CAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGGAGGAAATC
GACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAGACGAGCGA
CCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAGCGTACAGG
AGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTGGTGGAAAC
GGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGGAAGCCCCA
AGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCAACAGCAGC
AGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACGATGCGGCC
ACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTGCGGCGGCC
CGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACCGAAGCAGC
CCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGGCCAGGCTG
CGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCGGCCACTCC
CATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTCCGCGGCGC
CGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCATCAACAAC
AATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCGGCACCGAA
AATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTACTTCCCGG
GACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATAACCCGCAA
CATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCGCAGCATTT
CAATCAACGGGTTGCCGCCGTACGGAGCGGAGATCGGGACTGGGCGTTGT
TGGGATGCAGCTCAGCGCCGCCCCAGTCGTCGCCATCCGCAGCAGAGCTG
TCACCTGTGTGGGGCGATCAGTGTCCGCGCCCTCTGGCAACAGTCGCTGC
AGTCGCCAAGCAGCCAGCAGCAGCATCAGCAGCAGCACAGCATCAGCAGC
AGCATCGATCATCAGCCAGCAGCTCGACAGATTCGAATCCGTCACGAC
UFO03066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31908-RC | 2135 | CG31908-RC | 613..1699 | 9..1076 | 4890 | 97.8 | Plus |
| CG31908-RB | 1821 | CG31908-RB | 299..1385 | 9..1076 | 4890 | 97.8 | Plus |
| CG31908-RA | 2033 | CG31908-RA | 511..1597 | 9..1076 | 4890 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7026156..7026636 | 542..62 | 2405 | 100 | Minus |
| 2L | 23513712 | 2L | 7025289..7025818 | 1056..542 | 1870 | 95.9 | Minus |
| 2L | 23513712 | 2L | 7026724..7026777 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 624..858 | 146 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 793..837 | 134 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6929 | 240..414 | 125 | 56.7 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 274..349 | 125 | 64.5 | Plus |
UFO03066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:53 Download gff for
UFO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31908-RB | 335..1431 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:09 Download gff for
UFO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31908-RA | 510..1606 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:33 Download gff for
UFO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31908-RA | 501..1597 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:33 Download gff for
UFO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7025265..7025818 | 542..1076 | 95 | <- | Minus |
| 2L | 7026157..7026635 | 63..541 | 100 | <- | Minus |
| 2L | 7026724..7026785 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:09 Download gff for
UFO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7025265..7025818 | 542..1076 | 95 | <- | Minus |
| arm_2L | 7026157..7026635 | 63..541 | 100 | <- | Minus |
| arm_2L | 7026724..7026785 | 1..62 | 93 | | Minus |
