UFO03067.5prime Sequence
1086 bp (962 high quality bases) assembled on 2009-01-24
> UFO03067.5prime
CAGTCGACATGCCCAGCAGTTTTGCCAACGAGAGTCAGTTCCGATACCAG
AGCAGCCGCAATCGTGCCAGCTGCACAAGCCGGAGTCCCAGCGAGCCGGA
ATCCCCGGCGCCGGTGACGCCCAATTGCGATGTAGTCGATCAGGCGCTGG
CCGAGCTGCAGCTCCAATCGCAGGACATACGCAAGCAACAGGACCTGGTG
GACACCACAGCCACGAGCAGCAGCAGCCGAAAGCGTTCCGGATGGGAGAT
AAAGGGCTCCAAGCTATCCCTTAACACGCACAATCGCATTCGGAACATTG
TCGAGTCGCTAAAGATCAAACCGAATCCGGAGAAGCCCATGATACCGCTG
TCCATTGGTGATCCCACAACCTTTGGCAATCTAAAAGCCGCCGATGAGAC
AATGAAGGCGGTGCTGCATTCCCTGGAGAGCGGCAAGTACAATGGGTATG
CCAGCACCCAGGGTCACGAGATAGCCCGCAAAGCGGTGGCCAAATACAGT
GCCCACCAGCGTCCCGACGGAGAGATCGATGCCAACGAGGTGGTGCTGTG
CAGCGGCTGCTCCTCCGCCTTGGAGTACTGCATCCTGGCGCTGGCGGATC
GTGGTCAGAATGTTCTGGTGCCGCGACCGGGTTTCTGTTTGTACTATACG
CTGGCCCAGGGCTTGGATATCGAGGTGCGCTACTACGATCTTCTGCCCGA
TCAGCAGTGGCGCGCCGATCTCGTTCAGCTAGAGAGCCTGATCGATGAGA
ACACCGCCGCCCTTTTGATCAACAATCCGAGCAATCCCTGTGGCAGCGTC
TTCGATGAGAAGCATCTGCGCGAGTTGATAGCCATCTGCGAACGCCACTA
TCTGCCCATCATTGCCGATGAGATCTATGAGCACTTTGTGTTCCCCGGCT
CCAGCACTTGACGTGAGCAGCTGACACGGAGTTCAGTTCTCTCTGTGCGG
GTGACAACGCTTCTGATCCCGGTGCGATGGTGATCATATGCACGATCGCA
GAATCGTTGCCGATGCATGTCGTCTAAAGAACATGTGTGTCGCATTCTGG
ACTCCAAATACATCATCAGGTGATGCGGAATTCTGA
UFO03067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1461-RB | 2509 | CG1461-RB | 363..1438 | 9..1057 | 4690 | 97.2 | Plus |
| CG1461-RA | 1974 | CG1461-RA | 363..1438 | 9..1057 | 4690 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14263449..14263964 | 357..872 | 2580 | 100 | Plus |
| X | 23542271 | X | 14261585..14261937 | 9..361 | 1765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:09 has no hits.
UFO03067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:52 Download gff for
UFO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1461-RA | 357..1257 | 3..903 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:22 Download gff for
UFO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1461-RA | 357..1257 | 3..903 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:06 Download gff for
UFO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1461-RA | 357..1257 | 3..903 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:06 Download gff for
UFO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14261579..14261933 | 3..357 | 99 | -> | Plus |
| X | 14263450..14263964 | 358..872 | 100 | -> | Plus |
| X | 14264031..14264061 | 873..903 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:22 Download gff for
UFO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14155612..14155966 | 3..357 | 99 | -> | Plus |
| arm_X | 14157483..14157997 | 358..872 | 100 | -> | Plus |
| arm_X | 14158064..14158094 | 873..903 | 100 | == | Plus |
