UFO03070.5prime Sequence
857 bp (857 high quality bases) assembled on 2009-02-18
> UFO03070.5prime
CAGTCGACATGTCGGATGTGGACTCGGATGGCGAGGAGCCAACCCGGAAA
ACGGGCACCAATGCACTGGATGAGTTCCGGGAGAACTGGCAGCGGGAGCT
GCAGGAACACACAACAAACACTGGATCCAGGAGCCATTCCGAGGCTGGAG
ATCGCCTCACGGCGGCCAATTCCAATCTCAGCGAGGCTGATCTACTGCAG
GCCAAGGCGGAGAGTCTCTATCGGACCGCTGTGCAGCTGGAGCAGCGTGG
CAAGGTCTACGACGCACTACCCTTCTACAGGAAGGCCACCCAAATCGTTC
CGGATATTGAGTTCAGGTTCTACGAGCAGCAGAAGCAAAAGCTCAGCAAC
GATGTCAGCAAGAAGTACCTCAATCTGGCTAACGATTTGGCCAAGCAATT
GGATCTAGGTCAGTCGGATGGGGAGGAGGTCGTGGACAACCTGTACGAAA
AGTTCCAGCATGATTTGCGTCAGAAAAACATTTACAATGGCAAGATGATA
GCATCCAGCCGTGATGCCAATGTCCTGACCACCGGTCTGCACTTTGCCGA
CCTGCCGCCCGAGATTGTGATGCGCATCCTGCGCTGGGTGGTTTCCGCCC
AACTGGACATGCGCTCGCTAGAGCAGTGCGCTGCTGTTTGCAAAAGGTTT
CTATGTCTACGCGCGGGATGAGGAGCTCTGGAGGCTAGCTTGTGTCAAAG
TATGGGGCCACAACGTTGGAACTCTAGAGGCCCAGGATTCGGATGTAAGC
AACGTGTTCCACTCCTGGCGAGACATGTTCATCCGCCGAGACCGAGTTCT
TTTCACGGCTGCTACATCAGCAAGACTACGTACCCTGAGAAGGGGCGAGA
ACAGCTC
UFO03070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5961-RB | 1463 | CG5961-RB | 56..903 | 8..856 | 4160 | 99.5 | Plus |
| CG5961-RC | 1653 | CG5961-RC | 246..1093 | 8..856 | 4160 | 99.5 | Plus |
| CG5961-RA | 1658 | CG5961-RA | 251..1098 | 8..856 | 4160 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12459200..12459889 | 698..8 | 3405 | 99.9 | Minus |
| 3R | 32079331 | 3R | 12458981..12459138 | 856..699 | 680 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:09 has no hits.
UFO03070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:59 Download gff for
UFO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 248..1095 | 8..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:44 Download gff for
UFO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 251..1098 | 8..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:03 Download gff for
UFO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5961-RA | 251..1098 | 8..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:03 Download gff for
UFO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12458979..12459138 | 699..857 | 97 | <- | Minus |
| 3R | 12459200..12459889 | 8..698 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:44 Download gff for
UFO03070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8284701..8284860 | 699..857 | 97 | <- | Minus |
| arm_3R | 8284922..8285611 | 8..698 | 99 | | Minus |
