UFO03071.5prime Sequence
983 bp (983 high quality bases) assembled on 2009-02-18
> UFO03071.5prime
CAGTCGACATGGATGCTACCGCAAGTTCAAAGTTCAGCGATGTGGACGAA
TATGGCTTCAAGCGTGGCGACCACTTCGACTATAACAACTACTCAAAGTT
CATGGATGGTTACCTGAAAACGTTAACGCGGCGCCGCATGAAATGGGAGG
CCATTCTGCAGCAAAATACCGATCTCACCCAGGTGGACGCCAAGCTGAAG
CGGTACATTCGGAAGGGCATTCCTGGTCCATACCGTCCCGACGTCTGGAT
GAAGATATCTGGAGCTGCCGCCGCCCAGCGTCGCTCGCCGGATCTCTTTC
GCAACCTTCTGCGCACCGAGCCCTTCGACAAAGAAATCAGCGATTCCATA
TCAATCGATCTACCTCGTACCTTCCCCGACAATATTCACTTCGATATGAA
GAAGCAGCGGTTGTACAACATTCTCATCGCCTACGCCCATCACAATCGGG
ACGTGGGTTACTGCCAAGGTCTTAACTACATAGCCGGCCTCCTGTTGATC
GTCACCGACGATGAGGAGAAGTCCTTTTGGCTGCTCAAGCATATCGTTGA
AAACATCGTGCCGCAATACCATTCCCATAATATGGCCAATCTGCTGAGGG
ATCTGGCCGTGTTCCGCGAATTGGTCATCCGGCGAATTCCCGCTGTAAAT
CGGCATGTGGATAACTTGGGGCCTGCCCTATCCGGTGATCGCCAGCAAAT
GGTTCATCTGCATCTTTTGCCGAGGTGCTGCCCGTGGAGACTGTGCTACG
TATATGGGACTGTGTCTTTGCCGAGGGCTACAAGATCGTTTTTCGTGCCG
CCCTAACCATGTTCGTCACTCACAAGACCGCCATTCTGGGCTGTGATGAT
ATTGCTGCCCTGGCCATCTATTCCGGGATACCATGATCCAGGACACATTG
TGACGGACTGTCATGGCTTTGTTGAGGCATGGTCCATCTGCGTTTGAAGA
AGAAGCGAAGCTAGAAGAGCTAACCAAGGTGGG
UFO03071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5916-RB | 2396 | CG5916-RB | 534..1506 | 9..982 | 4575 | 98.5 | Plus |
| CG5916-RA | 2146 | CG5916-RA | 531..1503 | 9..982 | 4575 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16147741..16148375 | 36..670 | 3175 | 100 | Plus |
| 3R | 32079331 | 3R | 16148434..16148716 | 670..950 | 1160 | 97.2 | Plus |
Blast to na_te.dros performed 2014-11-28 21:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 3071..3163 | 924..824 | 116 | 64.7 | Minus |
UFO03071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:58 Download gff for
UFO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5916-RA | 536..1503 | 1..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:36 Download gff for
UFO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5916-RA | 536..1503 | 1..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:47 Download gff for
UFO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5916-RA | 523..1490 | 1..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:47 Download gff for
UFO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16147743..16148374 | 38..670 | 99 | -> | Plus |
| 3R | 16148435..16148733 | 671..970 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:36 Download gff for
UFO03071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11973465..11974096 | 38..670 | 99 | -> | Plus |
| arm_3R | 11974157..11974455 | 671..970 | 96 | | Plus |
