UFO03072.5prime Sequence
999 bp (978 high quality bases) assembled on 2009-02-18
> UFO03072.5prime
CAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGGCGGTGGAA
GATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAACGCACTCC
CAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTG
TGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGG
TCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCC
ACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTG
CAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCC
GAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGG
AAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGG
CAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCA
AAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGT
GGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAG
TCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAA
GCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGC
TACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGG
ACGAAGATGAGACGCTCGTCGAAACACACCATCCGCAAATAAAGAAAAGG
CATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAACATCCAGCA
GCAGTTTTGGAGTCCCATGAGCAAAATGAGCCAGCCAAGGAGCCCACACC
AGAACCTATGGAAGTGGACGGAAGTCGAAGGCAGTTCGGACACCGCTCAA
GTAGACACACCAGGCCATCGAAAACGTTTTCTGCCCGCTCCAGAAAACA
UFO03072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1910-RA | 3015 | CG1910-RA | 364..1351 | 9..996 | 4760 | 99.1 | Plus |
CG1910-RD | 2698 | CG1910-RD | 127..1034 | 89..996 | 4360 | 99 | Plus |
CG1910-RC | 2628 | CG1910-RC | 58..964 | 90..996 | 4355 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31749578..31750157 | 402..979 | 2660 | 98.8 | Plus |
3R | 32079331 | 3R | 31749207..31749522 | 90..405 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 31748006..31748086 | 9..89 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 890..919 | 114 | 86.7 | Plus |
UFO03072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:57 Download gff for
UFO03072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 362..1350 | 9..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:09 Download gff for
UFO03072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1352 | 9..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:30 Download gff for
UFO03072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1910-RA | 364..1352 | 9..998 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:30 Download gff for
UFO03072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31748006..31748086 | 9..89 | 100 | -> | Plus |
3R | 31749207..31749521 | 90..404 | 100 | -> | Plus |
3R | 31749581..31750173 | 405..998 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:09 Download gff for
UFO03072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27573728..27573808 | 9..89 | 100 | -> | Plus |
arm_3R | 27574929..27575243 | 90..404 | 100 | -> | Plus |
arm_3R | 27575303..27575895 | 405..998 | 98 | | Plus |