Clone UFO03072 Report

Search the DGRC for UFO03072

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:30
Well:72
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRpL4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03072.5prime Sequence

999 bp (978 high quality bases) assembled on 2009-02-18

> UFO03072.5prime
CAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGGCGGTGGAA
GATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAACGCACTCC
CAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTG
TGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGG
TCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCC
ACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTG
CAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCC
GAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGG
AAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGG
CAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCA
AAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGT
GGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAG
TCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAA
GCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGC
TACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGG
ACGAAGATGAGACGCTCGTCGAAACACACCATCCGCAAATAAAGAAAAGG
CATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAACATCCAGCA
GCAGTTTTGGAGTCCCATGAGCAAAATGAGCCAGCCAAGGAGCCCACACC
AGAACCTATGGAAGTGGACGGAAGTCGAAGGCAGTTCGGACACCGCTCAA
GTAGACACACCAGGCCATCGAAAACGTTTTCTGCCCGCTCCAGAAAACA

UFO03072.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RA 3015 CG1910-RA 364..1351 9..996 4760 99.1 Plus
CG1910-RD 2698 CG1910-RD 127..1034 89..996 4360 99 Plus
CG1910-RC 2628 CG1910-RC 58..964 90..996 4355 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750157 402..979 2660 98.8 Plus
3R 32079331 3R 31749207..31749522 90..405 1580 100 Plus
3R 32079331 3R 31748006..31748086 9..89 405 100 Plus
Blast to na_te.dros performed 2014-11-28 23:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 890..919 114 86.7 Plus

UFO03072.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:57 Download gff for UFO03072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 362..1350 9..998 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:09 Download gff for UFO03072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1352 9..998 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:30 Download gff for UFO03072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 364..1352 9..998 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:30 Download gff for UFO03072.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31748006..31748086 9..89 100 -> Plus
3R 31749207..31749521 90..404 100 -> Plus
3R 31749581..31750173 405..998 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:09 Download gff for UFO03072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27573728..27573808 9..89 100 -> Plus
arm_3R 27574929..27575243 90..404 100 -> Plus
arm_3R 27575303..27575895 405..998 98   Plus