UFO03074.5prime Sequence
1086 bp (986 high quality bases) assembled on 2009-01-24
> UFO03074.5prime
CAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCGCCATCGAG
GTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCCAACAAGGT
CAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCCTTGGGTTT
TGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATGAGCAGGTT
AACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACCAATGCGGC
CACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGAGAATCGCG
CCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCGTTGCCGCC
GATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTACTCGAACCC
CACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTTTACGACCG
TTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGGACTTCAAG
AACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTGATCATTCT
GCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCAGGAGCAGT
GGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCCCGCTGTTC
GACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGCGATGCCTG
GGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCATCTGCCAGT
CGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCAATCTGGCT
GTGGTGCAAAAGATGGTGCTACCAAGGCAGCGGTTCACTCTCAGCTGACG
CTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGGAGCTCGCAT
CGTTTCAAGTCTAAACACACGGAGTTGCGCAGGAGTGATGGCTCATCAGC
ATGTCGAGCCGCATCGCGAGATGCGTACAGCTTGCGGACAGCTGGTGCTT
GGGCACCCCGCACTTGGATCCATTGTCACAGATCGCATGTTCTCCTACCC
GTCTGACGAGAGCAAGTTCGTGGCTGATCGACAGTA
UFO03074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got1-RA | 1683 | CG8430-RA | 98..1201 | 9..1082 | 4770 | 97.1 | Plus |
| Got1-RB | 1682 | CG8430-RB | 97..1200 | 9..1082 | 4770 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16140634..16141241 | 300..906 | 2990 | 99.8 | Plus |
| 2R | 25286936 | 2R | 16140329..16140438 | 117..226 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 16138776..16138884 | 9..117 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 16140499..16140574 | 225..300 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:15 has no hits.
UFO03074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:42 Download gff for
UFO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got1-RA | 92..1193 | 1..1072 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:14 Download gff for
UFO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got1-RB | 88..1189 | 1..1072 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:02 Download gff for
UFO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got1-RB | 88..1189 | 1..1072 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:02 Download gff for
UFO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16140330..16140437 | 118..225 | 100 | -> | Plus |
| 2R | 16140500..16140573 | 226..299 | 100 | -> | Plus |
| 2R | 16138767..16138884 | 1..117 | 96 | -> | Plus |
| 2R | 16140634..16141435 | 300..1072 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:14 Download gff for
UFO03074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12026272..12026389 | 1..117 | 96 | -> | Plus |
| arm_2R | 12027835..12027942 | 118..225 | 100 | -> | Plus |
| arm_2R | 12028005..12028078 | 226..299 | 100 | -> | Plus |
| arm_2R | 12028139..12028940 | 300..1072 | 96 | | Plus |
