UFO03076.5prime Sequence
1067 bp (969 high quality bases) assembled on 2009-01-24
> UFO03076.5prime
CAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGGATGAGGAG
CAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAGAAGGATGT
CAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGATTTCCTCC
TGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCGAGCATCCC
TCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGCATGGACAT
CCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTTCGTTCTGG
CCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCCACGTCCTG
GTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAGGAGTATGA
GCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTTCTTTGGCG
GAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCACCCCGCAT
ATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGCAACAAGAA
ACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTGCGACAAGA
TGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTTTCCGTAGC
ACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTGAGCAAGGA
CATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGAGGTCTACG
TCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGCACTACGTC
AATCTGAAGGAGAACGAGAAGACAAGAACTGTTCGAACTGCTCGACGTGC
TCGAGTTCAATCAGTGGTCATCTTTGTGAGTCTGTGCACGTTGCGTGGCT
CTGTCGCAGCTGCTGACGAGCAAACTTCCCCGCCATCGGCATCATCGTGG
GATGACCCAGAGACGTCTGATCGCTACAGCAGTCAGACTCAGAGCCCATT
CTGTGCCACATCTCTTGCCGCGCATGACTCGAGCGGTGTGAACTCGGTTC
ACTACGACTGCCCGAGA
UFO03076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hel25E-RB | 1657 | CG7269-RB | 78..1166 | 9..1066 | 4650 | 96.9 | Plus |
| Hel25E-RA | 1596 | CG7269-RA | 188..1276 | 9..1066 | 4650 | 96.9 | Plus |
| Hel25E-RC | 1760 | CG7269-RC | 181..1269 | 9..1066 | 4650 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5541430..5541657 | 434..207 | 1140 | 100 | Minus |
| 2L | 23513712 | 2L | 5541723..5541921 | 207..9 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 5541153..5541338 | 615..430 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 5540972..5541091 | 734..615 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 5540169..5540300 | 864..735 | 560 | 98.5 | Minus |
| 2L | 23513712 | 2L | 5540008..5540109 | 960..864 | 260 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:33 has no hits.
UFO03076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:41 Download gff for
UFO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hel25E-RB | 70..1065 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:19 Download gff for
UFO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hel25E-RC | 173..1168 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:44 Download gff for
UFO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hel25E-RC | 173..1168 | 1..983 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:44 Download gff for
UFO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5540972..5541090 | 616..734 | 100 | <- | Minus |
| 2L | 5541153..5541336 | 432..615 | 100 | <- | Minus |
| 2L | 5541433..5541656 | 208..431 | 100 | <- | Minus |
| 2L | 5541723..5541926 | 1..207 | 98 | | Minus |
| 2L | 5539982..5540109 | 865..981 | 91 | <- | Minus |
| 2L | 5540169..5540300 | 735..864 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:19 Download gff for
UFO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5539982..5540109 | 865..981 | 91 | <- | Minus |
| arm_2L | 5540169..5540300 | 735..864 | 98 | <- | Minus |
| arm_2L | 5540972..5541090 | 616..734 | 100 | <- | Minus |
| arm_2L | 5541153..5541336 | 432..615 | 100 | <- | Minus |
| arm_2L | 5541433..5541656 | 208..431 | 100 | <- | Minus |
| arm_2L | 5541723..5541926 | 1..207 | 98 | | Minus |
